Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC45A1 (solute carrier family 45 member 1)

Identity

Alias_namesDNB5
deleted in neuroblastoma 5
solute carrier family 45, member 1
Other alias
HGNC (Hugo) SLC45A1
LocusID (NCBI) 50651
Atlas_Id 40344
Location 1p36.23  [Link to chromosome band 1p36]
Location_base_pair Starts at 8318085 and ends at 8344167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AFAP1 (4p16.1) / SLC45A1 (1p36.23)SLC45A1 (1p36.23) / EIF3K (19q13.2)AFAP1 4p16.1 / SLC45A1 1p36.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC45A1   17939
Cards
Entrez_Gene (NCBI)SLC45A1  50651  solute carrier family 45 member 1
AliasesDNB5
GeneCards (Weizmann)SLC45A1
Ensembl hg19 (Hinxton)ENSG00000162426 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162426 [Gene_View]  chr1:8318085-8344167 [Contig_View]  SLC45A1 [Vega]
ICGC DataPortalENSG00000162426
TCGA cBioPortalSLC45A1
AceView (NCBI)SLC45A1
Genatlas (Paris)SLC45A1
WikiGenes50651
SOURCE (Princeton)SLC45A1
Genetics Home Reference (NIH)SLC45A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC45A1  -     chr1:8318085-8344167 +  1p36.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC45A1  -     1p36.23   [Description]    (hg19-Feb_2009)
EnsemblSLC45A1 - 1p36.23 [CytoView hg19]  SLC45A1 - 1p36.23 [CytoView hg38]
Mapping of homologs : NCBISLC45A1 [Mapview hg19]  SLC45A1 [Mapview hg38]
OMIM605763   
Gene and transcription
Genbank (Entrez)AF118274 BC156140 BC156980
RefSeq transcript (Entrez)NM_001080397
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC45A1
Cluster EST : UnigeneHs.463036 [ NCBI ]
CGAP (NCI)Hs.463036
Alternative Splicing GalleryENSG00000162426
Gene ExpressionSLC45A1 [ NCBI-GEO ]   SLC45A1 [ EBI - ARRAY_EXPRESS ]   SLC45A1 [ SEEK ]   SLC45A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC45A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50651
GTEX Portal (Tissue expression)SLC45A1
Human Protein AtlasENSG00000162426-SLC45A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2W3
Splice isoforms : SwissVarQ9Y2W3
PhosPhoSitePlusQ9Y2W3
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC45A1
DMDM Disease mutations50651
Blocks (Seattle)SLC45A1
SuperfamilyQ9Y2W3
Human Protein Atlas [tissue]ENSG00000162426-SLC45A1 [tissue]
Peptide AtlasQ9Y2W3
IPIIPI00740308   IPI00971085   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2W3
IntAct (EBI)Q9Y2W3
FunCoupENSG00000162426
BioGRIDSLC45A1
STRING (EMBL)SLC45A1
ZODIACSLC45A1
Ontologies - Pathways
QuickGOQ9Y2W3
Ontology : AmiGOcarbohydrate transport  symporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIcarbohydrate transport  symporter activity  integral component of membrane  transmembrane transport  
NDEx NetworkSLC45A1
Atlas of Cancer Signalling NetworkSLC45A1
Wikipedia pathwaysSLC45A1
Orthology - Evolution
OrthoDB50651
GeneTree (enSembl)ENSG00000162426
Phylogenetic Trees/Animal Genes : TreeFamSLC45A1
HOVERGENQ9Y2W3
HOGENOMQ9Y2W3
Homologs : HomoloGeneSLC45A1
Homology/Alignments : Family Browser (UCSC)SLC45A1
Gene fusions - Rearrangements
Fusion : MitelmanAFAP1/SLC45A1 [4p16.1/1p36.23]  [t(1;4)(p36;p16)]  
Fusion: TCGA_MDACCAFAP1 4p16.1 SLC45A1 1p36.23 LUSC
Tumor Fusion PortalSLC45A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC45A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC45A1
dbVarSLC45A1
ClinVarSLC45A1
1000_GenomesSLC45A1 
Exome Variant ServerSLC45A1
ExAC (Exome Aggregation Consortium)ENSG00000162426
GNOMAD BrowserENSG00000162426
Genetic variants : HAPMAP50651
Genomic Variants (DGV)SLC45A1 [DGVbeta]
DECIPHERSLC45A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC45A1 
Mutations
ICGC Data PortalSLC45A1 
TCGA Data PortalSLC45A1 
Broad Tumor PortalSLC45A1
OASIS PortalSLC45A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC45A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC45A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC45A1
DgiDB (Drug Gene Interaction Database)SLC45A1
DoCM (Curated mutations)SLC45A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC45A1 (select a term)
intoGenSLC45A1
Cancer3DSLC45A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605763   
Orphanet
DisGeNETSLC45A1
MedgenSLC45A1
Genetic Testing Registry SLC45A1
NextProtQ9Y2W3 [Medical]
TSGene50651
GENETestsSLC45A1
Target ValidationSLC45A1
Huge Navigator SLC45A1 [HugePedia]
snp3D : Map Gene to Disease50651
BioCentury BCIQSLC45A1
ClinGenSLC45A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50651
Chemical/Pharm GKB GenePA134982862
Clinical trialSLC45A1
Miscellaneous
canSAR (ICR)SLC45A1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC45A1
EVEXSLC45A1
GoPubMedSLC45A1
iHOPSLC45A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:35:17 CET 2017

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