Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC45A2 (solute carrier family 45, member 2)

Identity

Other names1A1
AIM1
MATP
OCA4
SHEP5
HGNC (Hugo) SLC45A2
LocusID (NCBI) 51151
Location 5p13.2
Location_base_pair Starts at 33945972 and ends at 33984780 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC45A2   16472
Cards
Entrez_Gene (NCBI)SLC45A2  51151  solute carrier family 45, member 2
GeneCards (Weizmann)SLC45A2
Ensembl (Hinxton)ENSG00000164175 [Gene_View]  chr5:33945972-33984780 [Contig_View]  SLC45A2 [Vega]
ICGC DataPortalENSG00000164175
AceView (NCBI)SLC45A2
Genatlas (Paris)SLC45A2
WikiGenes51151
SOURCE (Princeton)NM_001012509 NM_001297417 NM_016180
Genomic and cartography
GoldenPath (UCSC)SLC45A2  -  5p13.2   chr5:33945972-33984780 -  5p13.2   [Description]    (hg19-Feb_2009)
EnsemblSLC45A2 - 5p13.2 [CytoView]
Mapping of homologs : NCBISLC45A2 [Mapview]
OMIM227240   606202   606574   
Gene and transcription
Genbank (Entrez)AF172849 BC003597 BC064405 BQ677785 BU166522
RefSeq transcript (Entrez)NM_001012509 NM_001297417 NM_016180
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NG_011691 NT_006576 NT_187551 NW_001838929 NW_004929321
Consensus coding sequences : CCDS (NCBI)SLC45A2
Cluster EST : UnigeneHs.278962 [ NCBI ]
CGAP (NCI)Hs.278962
Alternative Splicing : Fast-db (Paris)GSHG0024705
Alternative Splicing GalleryENSG00000164175
Gene ExpressionSLC45A2 [ NCBI-GEO ]     SLC45A2 [ SEEK ]   SLC45A2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UMX9 (Uniprot)
NextProtQ9UMX9  [Medical]
With graphics : InterProQ9UMX9
Splice isoforms : SwissVarQ9UMX9 (Swissvar)
Domains : Interpro (EBI)MFS_dom_general_subst_transpt   
Related proteins : CluSTrQ9UMX9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations51151
Blocks (Seattle)Q9UMX9
Human Protein AtlasENSG00000164175
Peptide AtlasQ9UMX9
HPRD05865
IPIIPI00299427   IPI00413233   IPI00219552   IPI00554732   IPI01019035   IPI00966810   
Protein Interaction databases
DIP (DOE-UCLA)Q9UMX9
IntAct (EBI)Q9UMX9
FunCoupENSG00000164175
BioGRIDSLC45A2
InParanoidQ9UMX9
Interologous Interaction database Q9UMX9
IntegromeDBSLC45A2
STRING (EMBL)SLC45A2
Ontologies - Pathways
Ontology : AmiGOvisual perception  integral component of membrane  melanosome membrane  melanin biosynthetic process  developmental pigmentation  response to stimulus  
Ontology : EGO-EBIvisual perception  integral component of membrane  melanosome membrane  melanin biosynthetic process  developmental pigmentation  response to stimulus  
Protein Interaction DatabaseSLC45A2
Wikipedia pathwaysSLC45A2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC45A2
SNP (GeneSNP Utah)SLC45A2
SNP : HGBaseSLC45A2
Genetic variants : HAPMAPSLC45A2
1000_GenomesSLC45A2 
ICGC programENSG00000164175 
CONAN: Copy Number AnalysisSLC45A2 
Somatic Mutations in Cancer : COSMICSLC45A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDSLC45A2
OMIM227240    606202    606574   
MedgenSLC45A2
GENETestsSLC45A2
Disease Genetic AssociationSLC45A2
Huge Navigator SLC45A2 [HugePedia]  SLC45A2 [HugeCancerGEM]
Genomic VariantsSLC45A2  SLC45A2 [DGVbeta]
Exome VariantSLC45A2
dbVarSLC45A2
ClinVarSLC45A2
snp3D : Map Gene to Disease51151
General knowledge
Homologs : HomoloGeneSLC45A2
Homology/Alignments : Family Browser (UCSC)SLC45A2
Phylogenetic Trees/Animal Genes : TreeFamSLC45A2
Chemical/Protein Interactions : CTD51151
Chemical/Pharm GKB GenePA134897756
Clinical trialSLC45A2
Cancer Resource (Charite)ENSG00000164175
Other databases
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
CoreMineSLC45A2
iHOPSLC45A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:17:17 CEST 2014

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