Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC45A4 (solute carrier family 45 member 4)

Identity

Alias_namessolute carrier family 45, member 4
Alias_symbol (synonym)KIAA1126
Other alias-
HGNC (Hugo) SLC45A4
LocusID (NCBI) 57210
Atlas_Id 73447
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 141207166 and ends at 141228574 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNOT2 (12q15) / SLC45A4 (8q24.3)PTK2 (8q24.3) / SLC45A4 (8q24.3)TRAPPC9 (8q24.3) / SLC45A4 (8q24.3)
TRAPPC9 SLC45A4CNOT2 SLC45A4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC45A4   29196
Cards
Entrez_Gene (NCBI)SLC45A4  57210  solute carrier family 45 member 4
Aliases
GeneCards (Weizmann)SLC45A4
Ensembl hg19 (Hinxton)ENSG00000022567 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000022567 [Gene_View]  chr8:141207166-141228574 [Contig_View]  SLC45A4 [Vega]
ICGC DataPortalENSG00000022567
TCGA cBioPortalSLC45A4
AceView (NCBI)SLC45A4
Genatlas (Paris)SLC45A4
WikiGenes57210
SOURCE (Princeton)SLC45A4
Genetics Home Reference (NIH)SLC45A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC45A4  -     chr8:141207166-141228574 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC45A4  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblSLC45A4 - 8q24.3 [CytoView hg19]  SLC45A4 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBISLC45A4 [Mapview hg19]  SLC45A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB032952 AI769055 AK128212 AL137490 AL713711
RefSeq transcript (Entrez)NM_001080431 NM_001286646 NM_001286648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC45A4
Cluster EST : UnigeneHs.372492 [ NCBI ]
CGAP (NCI)Hs.372492
Alternative Splicing GalleryENSG00000022567
Gene ExpressionSLC45A4 [ NCBI-GEO ]   SLC45A4 [ EBI - ARRAY_EXPRESS ]   SLC45A4 [ SEEK ]   SLC45A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC45A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57210
GTEX Portal (Tissue expression)SLC45A4
Human Protein AtlasENSG00000022567-SLC45A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BKX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BKX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BKX6
Splice isoforms : SwissVarQ5BKX6
PhosPhoSitePlusQ5BKX6
Domains : Interpro (EBI)MFS_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC45A4
DMDM Disease mutations57210
Blocks (Seattle)SLC45A4
SuperfamilyQ5BKX6
Human Protein Atlas [tissue]ENSG00000022567-SLC45A4 [tissue]
Peptide AtlasQ5BKX6
IPIIPI00977047   IPI00297407   IPI00382905   IPI00978696   IPI00981811   IPI00980808   
Protein Interaction databases
DIP (DOE-UCLA)Q5BKX6
IntAct (EBI)Q5BKX6
FunCoupENSG00000022567
BioGRIDSLC45A4
STRING (EMBL)SLC45A4
ZODIACSLC45A4
Ontologies - Pathways
QuickGOQ5BKX6
Ontology : AmiGOsucrose:proton symporter activity  sucrose transport  integral component of membrane  
Ontology : EGO-EBIsucrose:proton symporter activity  sucrose transport  integral component of membrane  
NDEx NetworkSLC45A4
Atlas of Cancer Signalling NetworkSLC45A4
Wikipedia pathwaysSLC45A4
Orthology - Evolution
OrthoDB57210
GeneTree (enSembl)ENSG00000022567
Phylogenetic Trees/Animal Genes : TreeFamSLC45A4
HOVERGENQ5BKX6
HOGENOMQ5BKX6
Homologs : HomoloGeneSLC45A4
Homology/Alignments : Family Browser (UCSC)SLC45A4
Gene fusions - Rearrangements
Fusion: TCGA_MDACCTRAPPC9 SLC45A4
Fusion: TCGA_MDACCCNOT2 SLC45A4
Tumor Fusion PortalSLC45A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC45A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC45A4
dbVarSLC45A4
ClinVarSLC45A4
1000_GenomesSLC45A4 
Exome Variant ServerSLC45A4
ExAC (Exome Aggregation Consortium)ENSG00000022567
GNOMAD BrowserENSG00000022567
Genetic variants : HAPMAP57210
Genomic Variants (DGV)SLC45A4 [DGVbeta]
DECIPHERSLC45A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC45A4 
Mutations
ICGC Data PortalSLC45A4 
TCGA Data PortalSLC45A4 
Broad Tumor PortalSLC45A4
OASIS PortalSLC45A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC45A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC45A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC45A4
DgiDB (Drug Gene Interaction Database)SLC45A4
DoCM (Curated mutations)SLC45A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC45A4 (select a term)
intoGenSLC45A4
Cancer3DSLC45A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC45A4
MedgenSLC45A4
Genetic Testing Registry SLC45A4
NextProtQ5BKX6 [Medical]
TSGene57210
GENETestsSLC45A4
Target ValidationSLC45A4
Huge Navigator SLC45A4 [HugePedia]
snp3D : Map Gene to Disease57210
BioCentury BCIQSLC45A4
ClinGenSLC45A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57210
Chemical/Pharm GKB GenePA142670902
Clinical trialSLC45A4
Miscellaneous
canSAR (ICR)SLC45A4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC45A4
EVEXSLC45A4
GoPubMedSLC45A4
iHOPSLC45A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:59 CET 2017

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