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SLC46A3 (solute carrier family 46 member 3)

Identity

Alias_namessolute carrier family 46, member 3
Alias_symbol (synonym)DKFZp686A1775
FLJ42613
Other aliasFKSG16
HGNC (Hugo) SLC46A3
LocusID (NCBI) 283537
Atlas_Id 73448
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 28700081 and ends at 28719013 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC46A3   27501
Cards
Entrez_Gene (NCBI)SLC46A3  283537  solute carrier family 46 member 3
AliasesFKSG16
GeneCards (Weizmann)SLC46A3
Ensembl hg19 (Hinxton)ENSG00000139508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139508 [Gene_View]  chr13:28700081-28719013 [Contig_View]  SLC46A3 [Vega]
ICGC DataPortalENSG00000139508
TCGA cBioPortalSLC46A3
AceView (NCBI)SLC46A3
Genatlas (Paris)SLC46A3
WikiGenes283537
SOURCE (Princeton)SLC46A3
Genetics Home Reference (NIH)SLC46A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC46A3  -     chr13:28700081-28719013 -  13q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC46A3  -     13q12.3   [Description]    (hg19-Feb_2009)
EnsemblSLC46A3 - 13q12.3 [CytoView hg19]  SLC46A3 - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBISLC46A3 [Mapview hg19]  SLC46A3 [Mapview hg38]
OMIM616764   
Gene and transcription
Genbank (Entrez)AF315594 AK026720 AK093932 AK098426 AK124604
RefSeq transcript (Entrez)NM_001135919 NM_001347960 NM_181785
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC46A3
Cluster EST : UnigeneHs.117167 [ NCBI ]
CGAP (NCI)Hs.117167
Alternative Splicing GalleryENSG00000139508
Gene ExpressionSLC46A3 [ NCBI-GEO ]   SLC46A3 [ EBI - ARRAY_EXPRESS ]   SLC46A3 [ SEEK ]   SLC46A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC46A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283537
GTEX Portal (Tissue expression)SLC46A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3Q1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3Q1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3Q1
Splice isoforms : SwissVarQ7Z3Q1
PhosPhoSitePlusQ7Z3Q1
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC46A3
DMDM Disease mutations283537
Blocks (Seattle)SLC46A3
SuperfamilyQ7Z3Q1
Human Protein AtlasENSG00000139508
Peptide AtlasQ7Z3Q1
HPRD14146
IPIIPI00792235   IPI00334280   IPI00869046   IPI00871888   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3Q1
IntAct (EBI)Q7Z3Q1
FunCoupENSG00000139508
BioGRIDSLC46A3
STRING (EMBL)SLC46A3
ZODIACSLC46A3
Ontologies - Pathways
QuickGOQ7Z3Q1
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  transmembrane transport  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  transmembrane transport  extracellular exosome  
NDEx NetworkSLC46A3
Atlas of Cancer Signalling NetworkSLC46A3
Wikipedia pathwaysSLC46A3
Orthology - Evolution
OrthoDB283537
GeneTree (enSembl)ENSG00000139508
Phylogenetic Trees/Animal Genes : TreeFamSLC46A3
HOVERGENQ7Z3Q1
HOGENOMQ7Z3Q1
Homologs : HomoloGeneSLC46A3
Homology/Alignments : Family Browser (UCSC)SLC46A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC46A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC46A3
dbVarSLC46A3
ClinVarSLC46A3
1000_GenomesSLC46A3 
Exome Variant ServerSLC46A3
ExAC (Exome Aggregation Consortium)SLC46A3 (select the gene name)
Genetic variants : HAPMAP283537
Genomic Variants (DGV)SLC46A3 [DGVbeta]
DECIPHERSLC46A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC46A3 
Mutations
ICGC Data PortalSLC46A3 
TCGA Data PortalSLC46A3 
Broad Tumor PortalSLC46A3
OASIS PortalSLC46A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC46A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC46A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC46A3
DgiDB (Drug Gene Interaction Database)SLC46A3
DoCM (Curated mutations)SLC46A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC46A3 (select a term)
intoGenSLC46A3
Cancer3DSLC46A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616764   
Orphanet
MedgenSLC46A3
Genetic Testing Registry SLC46A3
NextProtQ7Z3Q1 [Medical]
TSGene283537
GENETestsSLC46A3
Target ValidationSLC46A3
Huge Navigator SLC46A3 [HugePedia]
snp3D : Map Gene to Disease283537
BioCentury BCIQSLC46A3
ClinGenSLC46A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283537
Chemical/Pharm GKB GenePA162403791
Clinical trialSLC46A3
Miscellaneous
canSAR (ICR)SLC46A3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC46A3
EVEXSLC46A3
GoPubMedSLC46A3
iHOPSLC46A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:14 CEST 2017

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