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SLC47A1 (solute carrier family 47 member 1)

Identity

Alias (NCBI)MATE1
HGNC (Hugo) SLC47A1
HGNC Alias symbFLJ10847
MATE1
HGNC Alias namemultidrug and toxin extrusion 1
HGNC Previous namesolute carrier family 47 (multidrug and toxin extrusion), member 1
LocusID (NCBI) 55244
Atlas_Id 56745
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 19533854 and ends at 19579034 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FGG (4q31.3) / SLC47A1 (17p11.2)KRT19 (17q21.2) / SLC47A1 (17p11.2)SLC47A1 (17p11.2) / SLC47A1 (17p11.2)
SPAG5 (17q11.2) / SLC47A1 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC47A1   25588
Cards
Entrez_Gene (NCBI)SLC47A1    solute carrier family 47 member 1
AliasesMATE1
GeneCards (Weizmann)SLC47A1
Ensembl hg19 (Hinxton)ENSG00000142494 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142494 [Gene_View]  ENSG00000142494 [Sequence]  chr17:19533854-19579034 [Contig_View]  SLC47A1 [Vega]
ICGC DataPortalENSG00000142494
TCGA cBioPortalSLC47A1
AceView (NCBI)SLC47A1
Genatlas (Paris)SLC47A1
SOURCE (Princeton)SLC47A1
Genetics Home Reference (NIH)SLC47A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC47A1  -     chr17:19533854-19579034 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC47A1  -     17p11.2   [Description]    (hg19-Feb_2009)
GoldenPathSLC47A1 - 17p11.2 [CytoView hg19]  SLC47A1 - 17p11.2 [CytoView hg38]
ImmunoBaseENSG00000142494
Genome Data Viewer NCBISLC47A1 [Mapview hg19]  
OMIM609832   
Gene and transcription
Genbank (Entrez)AK001709 AK222625 AK225360 AK293196 AK298254
RefSeq transcript (Entrez)NM_018242
Consensus coding sequences : CCDS (NCBI)SLC47A1
Gene ExpressionSLC47A1 [ NCBI-GEO ]   SLC47A1 [ EBI - ARRAY_EXPRESS ]   SLC47A1 [ SEEK ]   SLC47A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC47A1 [ Firebrowse - Broad ]
GenevisibleExpression of SLC47A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55244
GTEX Portal (Tissue expression)SLC47A1
Human Protein AtlasENSG00000142494-SLC47A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FL8
PhosPhoSitePlusQ96FL8
Domains : Interpro (EBI)MATE_fam   
Domain families : Pfam (Sanger)MatE (PF01554)   
Domain families : Pfam (NCBI)pfam01554   
Conserved Domain (NCBI)SLC47A1
SuperfamilyQ96FL8
AlphaFold pdb e-kbQ96FL8   
Human Protein Atlas [tissue]ENSG00000142494-SLC47A1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96FL8
IntAct (EBI)Q96FL8
BioGRIDSLC47A1
STRING (EMBL)SLC47A1
ZODIACSLC47A1
Ontologies - Pathways
QuickGOQ96FL8
Ontology : AmiGOprotein binding  plasma membrane  plasma membrane  L-amino acid transmembrane transporter activity  antiporter activity  organic cation transport  membrane  integral component of membrane  basolateral plasma membrane  apical plasma membrane  transmembrane transporter activity  vesicle  amide transport  amide transmembrane transporter activity  xenobiotic transport  xenobiotic transmembrane transporter activity  transmembrane transport  L-arginine transmembrane transporter activity  amino acid import across plasma membrane  L-arginine import across plasma membrane  L-alpha-amino acid transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  plasma membrane  L-amino acid transmembrane transporter activity  antiporter activity  organic cation transport  membrane  integral component of membrane  basolateral plasma membrane  apical plasma membrane  transmembrane transporter activity  vesicle  amide transport  amide transmembrane transporter activity  xenobiotic transport  xenobiotic transmembrane transporter activity  transmembrane transport  L-arginine transmembrane transporter activity  amino acid import across plasma membrane  L-arginine import across plasma membrane  L-alpha-amino acid transmembrane transport  
NDEx NetworkSLC47A1
Atlas of Cancer Signalling NetworkSLC47A1
Wikipedia pathwaysSLC47A1
Orthology - Evolution
OrthoDB55244
GeneTree (enSembl)ENSG00000142494
Phylogenetic Trees/Animal Genes : TreeFamSLC47A1
Homologs : HomoloGeneSLC47A1
Homology/Alignments : Family Browser (UCSC)SLC47A1
Gene fusions - Rearrangements
Fusion : QuiverSLC47A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC47A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC47A1
dbVarSLC47A1
ClinVarSLC47A1
MonarchSLC47A1
1000_GenomesSLC47A1 
Exome Variant ServerSLC47A1
GNOMAD BrowserENSG00000142494
Varsome BrowserSLC47A1
ACMGSLC47A1 variants
VarityQ96FL8
Genomic Variants (DGV)SLC47A1 [DGVbeta]
DECIPHERSLC47A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC47A1 
Mutations
ICGC Data PortalSLC47A1 
TCGA Data PortalSLC47A1 
Broad Tumor PortalSLC47A1
OASIS PortalSLC47A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC47A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC47A1
Mutations and Diseases : HGMDSLC47A1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC47A1
DgiDB (Drug Gene Interaction Database)SLC47A1
DoCM (Curated mutations)SLC47A1
CIViC (Clinical Interpretations of Variants in Cancer)SLC47A1
Cancer3DSLC47A1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609832   
Orphanet
DisGeNETSLC47A1
MedgenSLC47A1
Genetic Testing Registry SLC47A1
NextProtQ96FL8 [Medical]
GENETestsSLC47A1
Target ValidationSLC47A1
Huge Navigator SLC47A1 [HugePedia]
ClinGenSLC47A1
Clinical trials, drugs, therapy
MyCancerGenomeSLC47A1
Protein Interactions : CTDSLC47A1
Pharm GKB GenePA162403808
Pharm GKB PathwaysPA165948259   
PharosQ96FL8
Clinical trialSLC47A1
Miscellaneous
canSAR (ICR)SLC47A1
HarmonizomeSLC47A1
DataMed IndexSLC47A1
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC47A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:31:52 CEST 2021

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