Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC47A1 (solute carrier family 47 member 1)

Identity

Other aliasMATE1
HGNC (Hugo) SLC47A1
LocusID (NCBI) 55244
Atlas_Id 56745
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 19533854 and ends at 19579033 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FGG (4q31.3) / SLC47A1 (17p11.2)KRT19 (17q21.2) / SLC47A1 (17p11.2)SLC47A1 (17p11.2) / SLC47A1 (17p11.2)
SPAG5 (17q11.2) / SLC47A1 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC47A1   25588
Cards
Entrez_Gene (NCBI)SLC47A1  55244  solute carrier family 47 member 1
AliasesMATE1
GeneCards (Weizmann)SLC47A1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:19533854-19579033 [Contig_View]  SLC47A1 [Vega]
TCGA cBioPortalSLC47A1
AceView (NCBI)SLC47A1
Genatlas (Paris)SLC47A1
WikiGenes55244
SOURCE (Princeton)SLC47A1
Genetics Home Reference (NIH)SLC47A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC47A1  -     chr17:19533854-19579033 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC47A1  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblSLC47A1 - 17p11.2 [CytoView hg19]  SLC47A1 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBISLC47A1 [Mapview hg19]  SLC47A1 [Mapview hg38]
OMIM609832   
Gene and transcription
Genbank (Entrez)AK001709 AK222625 AK225360 AK293196 AK298254
RefSeq transcript (Entrez)NM_018242
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC47A1
Cluster EST : UnigeneHs.232054 [ NCBI ]
CGAP (NCI)Hs.232054
Gene ExpressionSLC47A1 [ NCBI-GEO ]   SLC47A1 [ EBI - ARRAY_EXPRESS ]   SLC47A1 [ SEEK ]   SLC47A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC47A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55244
GTEX Portal (Tissue expression)SLC47A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FL8
Splice isoforms : SwissVarQ96FL8
PhosPhoSitePlusQ96FL8
Domains : Interpro (EBI)MATE_fam   
Domain families : Pfam (Sanger)MatE (PF01554)   
Domain families : Pfam (NCBI)pfam01554   
Conserved Domain (NCBI)SLC47A1
DMDM Disease mutations55244
Blocks (Seattle)SLC47A1
SuperfamilyQ96FL8
Peptide AtlasQ96FL8
IPIIPI00465173   IPI00877108   IPI00790344   IPI00909498   IPI00908641   IPI00908549   IPI01013971   
Protein Interaction databases
DIP (DOE-UCLA)Q96FL8
IntAct (EBI)Q96FL8
BioGRIDSLC47A1
STRING (EMBL)SLC47A1
ZODIACSLC47A1
Ontologies - Pathways
QuickGOQ96FL8
Ontology : AmiGOmonovalent cation:proton antiporter activity  plasma membrane  drug transmembrane transport  drug:proton antiporter activity  organic cation transport  integral component of membrane  vesicle  drug export  transmembrane transport  hydrogen ion transmembrane transport  
Ontology : EGO-EBImonovalent cation:proton antiporter activity  plasma membrane  drug transmembrane transport  drug:proton antiporter activity  organic cation transport  integral component of membrane  vesicle  drug export  transmembrane transport  hydrogen ion transmembrane transport  
NDEx NetworkSLC47A1
Atlas of Cancer Signalling NetworkSLC47A1
Wikipedia pathwaysSLC47A1
Orthology - Evolution
OrthoDB55244
Phylogenetic Trees/Animal Genes : TreeFamSLC47A1
HOVERGENQ96FL8
HOGENOMQ96FL8
Homologs : HomoloGeneSLC47A1
Homology/Alignments : Family Browser (UCSC)SLC47A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC47A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC47A1
dbVarSLC47A1
ClinVarSLC47A1
1000_GenomesSLC47A1 
Exome Variant ServerSLC47A1
ExAC (Exome Aggregation Consortium)SLC47A1 (select the gene name)
Genetic variants : HAPMAP55244
Genomic Variants (DGV)SLC47A1 [DGVbeta]
DECIPHERSLC47A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC47A1 
Mutations
ICGC Data PortalSLC47A1 
TCGA Data PortalSLC47A1 
Broad Tumor PortalSLC47A1
OASIS PortalSLC47A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC47A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC47A1
BioMutasearch SLC47A1
DgiDB (Drug Gene Interaction Database)SLC47A1
DoCM (Curated mutations)SLC47A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC47A1 (select a term)
intoGenSLC47A1
Cancer3DSLC47A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609832   
Orphanet
MedgenSLC47A1
Genetic Testing Registry SLC47A1
NextProtQ96FL8 [Medical]
TSGene55244
GENETestsSLC47A1
Huge Navigator SLC47A1 [HugePedia]
snp3D : Map Gene to Disease55244
BioCentury BCIQSLC47A1
ClinGenSLC47A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55244
Chemical/Pharm GKB GenePA162403808
Clinical trialSLC47A1
Miscellaneous
canSAR (ICR)SLC47A1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC47A1
EVEXSLC47A1
GoPubMedSLC47A1
iHOPSLC47A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:37:52 CEST 2017

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