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SLC47A2 (solute carrier family 47 member 2)

Identity

Other aliasMATE2
MATE2-B
MATE2-K
MATE2K
HGNC (Hugo) SLC47A2
LocusID (NCBI) 146802
Atlas_Id 57011
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 19678315 and ends at 19716730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RASSF8 (12p12.1) / SLC47A2 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC47A2   26439
Cards
Entrez_Gene (NCBI)SLC47A2  146802  solute carrier family 47 member 2
AliasesMATE2; MATE2-B; MATE2-K; MATE2K
GeneCards (Weizmann)SLC47A2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:19678315-19716730 [Contig_View]  SLC47A2 [Vega]
TCGA cBioPortalSLC47A2
AceView (NCBI)SLC47A2
Genatlas (Paris)SLC47A2
WikiGenes146802
SOURCE (Princeton)SLC47A2
Genetics Home Reference (NIH)SLC47A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC47A2  -     chr17:19678315-19716730 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC47A2  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblSLC47A2 - 17p11.2 [CytoView hg19]  SLC47A2 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBISLC47A2 [Mapview hg19]  SLC47A2 [Mapview hg38]
OMIM609833   
Gene and transcription
Genbank (Entrez)AB250364 AB250701 AK055758 AK096080 AK123589
RefSeq transcript (Entrez)NM_001099646 NM_001256663 NM_152908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC47A2
Cluster EST : UnigeneHs.126830 [ NCBI ]
CGAP (NCI)Hs.126830
Gene ExpressionSLC47A2 [ NCBI-GEO ]   SLC47A2 [ EBI - ARRAY_EXPRESS ]   SLC47A2 [ SEEK ]   SLC47A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC47A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146802
GTEX Portal (Tissue expression)SLC47A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VL8
Splice isoforms : SwissVarQ86VL8
PhosPhoSitePlusQ86VL8
Domains : Interpro (EBI)MATE_fam   
Domain families : Pfam (Sanger)MatE (PF01554)   
Domain families : Pfam (NCBI)pfam01554   
Conserved Domain (NCBI)SLC47A2
DMDM Disease mutations146802
Blocks (Seattle)SLC47A2
SuperfamilyQ86VL8
Peptide AtlasQ86VL8
IPIIPI00384332   IPI00876926   IPI00796514   IPI00383387   IPI00793287   IPI00876983   IPI00929420   IPI01012679   
Protein Interaction databases
DIP (DOE-UCLA)Q86VL8
IntAct (EBI)Q86VL8
BioGRIDSLC47A2
STRING (EMBL)SLC47A2
ZODIACSLC47A2
Ontologies - Pathways
QuickGOQ86VL8
Ontology : AmiGOplasma membrane  drug transmembrane transport  drug transmembrane transporter activity  drug:proton antiporter activity  integral component of membrane  drug export  transmembrane transport  
Ontology : EGO-EBIplasma membrane  drug transmembrane transport  drug transmembrane transporter activity  drug:proton antiporter activity  integral component of membrane  drug export  transmembrane transport  
NDEx NetworkSLC47A2
Atlas of Cancer Signalling NetworkSLC47A2
Wikipedia pathwaysSLC47A2
Orthology - Evolution
OrthoDB146802
Phylogenetic Trees/Animal Genes : TreeFamSLC47A2
HOVERGENQ86VL8
HOGENOMQ86VL8
Homologs : HomoloGeneSLC47A2
Homology/Alignments : Family Browser (UCSC)SLC47A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC47A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC47A2
dbVarSLC47A2
ClinVarSLC47A2
1000_GenomesSLC47A2 
Exome Variant ServerSLC47A2
ExAC (Exome Aggregation Consortium)SLC47A2 (select the gene name)
Genetic variants : HAPMAP146802
Genomic Variants (DGV)SLC47A2 [DGVbeta]
DECIPHERSLC47A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC47A2 
Mutations
ICGC Data PortalSLC47A2 
TCGA Data PortalSLC47A2 
Broad Tumor PortalSLC47A2
OASIS PortalSLC47A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC47A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC47A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC47A2
DgiDB (Drug Gene Interaction Database)SLC47A2
DoCM (Curated mutations)SLC47A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC47A2 (select a term)
intoGenSLC47A2
Cancer3DSLC47A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609833   
Orphanet
MedgenSLC47A2
Genetic Testing Registry SLC47A2
NextProtQ86VL8 [Medical]
TSGene146802
GENETestsSLC47A2
Target ValidationSLC47A2
Huge Navigator SLC47A2 [HugePedia]
snp3D : Map Gene to Disease146802
BioCentury BCIQSLC47A2
ClinGenSLC47A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146802
Chemical/Pharm GKB GenePA162403847
Clinical trialSLC47A2
Miscellaneous
canSAR (ICR)SLC47A2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC47A2
EVEXSLC47A2
GoPubMedSLC47A2
iHOPSLC47A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:07:44 CEST 2017

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