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SLC49A3 (solute carrier family 49 member 3)

Identity

Alias (NCBI)LP2561
MFSD7
HGNC (Hugo) SLC49A3
LocusID (NCBI) 84179
Atlas_Id 80652
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 681824 and ends at 689441 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SLC49A3   26177
Cards
Entrez_Gene (NCBI)SLC49A3  84179  solute carrier family 49 member 3
AliasesLP2561; MFSD7
GeneCards (Weizmann)SLC49A3
Ensembl hg19 (Hinxton)ENSG00000169026 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169026 [Gene_View]  ENSG00000169026 [Sequence]  chr4:681824-689441 [Contig_View]  SLC49A3 [Vega]
ICGC DataPortalENSG00000169026
TCGA cBioPortalSLC49A3
AceView (NCBI)SLC49A3
Genatlas (Paris)SLC49A3
WikiGenes84179
SOURCE (Princeton)SLC49A3
Genetics Home Reference (NIH)SLC49A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC49A3  -     chr4:681824-689441 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC49A3  -     4p16.3   [Description]    (hg19-Feb_2009)
GoldenPathSLC49A3 - 4p16.3 [CytoView hg19]  SLC49A3 - 4p16.3 [CytoView hg38]
ImmunoBaseENSG00000169026
genome Data Viewer NCBISLC49A3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK025922 AK292010 AY203936 AY358401 BC030246
RefSeq transcript (Entrez)NM_001294341 NM_001294342 NM_001378059 NM_001378060 NM_001378061 NM_001378062 NM_032219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC49A3
Alternative Splicing GalleryENSG00000169026
Gene ExpressionSLC49A3 [ NCBI-GEO ]   SLC49A3 [ EBI - ARRAY_EXPRESS ]   SLC49A3 [ SEEK ]   SLC49A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC49A3 [ Firebrowse - Broad ]
GenevisibleExpression of SLC49A3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84179
GTEX Portal (Tissue expression)SLC49A3
Human Protein AtlasENSG00000169026-SLC49A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXD7
Splice isoforms : SwissVarQ6UXD7
PhosPhoSitePlusQ6UXD7
Domains : Interpro (EBI)MFS    MFS_trans_sf   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC49A3
DMDM Disease mutations84179
Blocks (Seattle)SLC49A3
SuperfamilyQ6UXD7
Human Protein Atlas [tissue]ENSG00000169026-SLC49A3 [tissue]
Peptide AtlasQ6UXD7
IPIIPI00827818   IPI00465320   IPI00030448   IPI00964652   IPI00967669   IPI00964966   IPI00967369   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXD7
IntAct (EBI)Q6UXD7
FunCoupENSG00000169026
BioGRIDSLC49A3
STRING (EMBL)SLC49A3
ZODIACSLC49A3
Ontologies - Pathways
QuickGOQ6UXD7
Ontology : AmiGOintegral component of plasma membrane  transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  transmembrane transport  
NDEx NetworkSLC49A3
Atlas of Cancer Signalling NetworkSLC49A3
Wikipedia pathwaysSLC49A3
Orthology - Evolution
OrthoDB84179
GeneTree (enSembl)ENSG00000169026
Phylogenetic Trees/Animal Genes : TreeFamSLC49A3
HOGENOMQ6UXD7
Homologs : HomoloGeneSLC49A3
Homology/Alignments : Family Browser (UCSC)SLC49A3
Gene fusions - Rearrangements
Fusion : QuiverSLC49A3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC49A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC49A3
dbVarSLC49A3
ClinVarSLC49A3
1000_GenomesSLC49A3 
Exome Variant ServerSLC49A3
GNOMAD BrowserENSG00000169026
Varsome BrowserSLC49A3
Genetic variants : HAPMAP84179
Genomic Variants (DGV)SLC49A3 [DGVbeta]
DECIPHERSLC49A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC49A3 
Mutations
ICGC Data PortalSLC49A3 
TCGA Data PortalSLC49A3 
Broad Tumor PortalSLC49A3
OASIS PortalSLC49A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC49A3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC49A3
Mutations and Diseases : HGMDSLC49A3
BioMutasearch SLC49A3
DgiDB (Drug Gene Interaction Database)SLC49A3
DoCM (Curated mutations)SLC49A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC49A3 (select a term)
intoGenSLC49A3
Cancer3DSLC49A3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC49A3
MedgenSLC49A3
Genetic Testing Registry SLC49A3
NextProtQ6UXD7 [Medical]
TSGene84179
GENETestsSLC49A3
Target ValidationSLC49A3
Huge Navigator SLC49A3 [HugePedia]
snp3D : Map Gene to Disease84179
BioCentury BCIQSLC49A3
ClinGenSLC49A3
Clinical trials, drugs, therapy
Protein Interactions : CTD84179
Pharm GKB GenePA143485534
Clinical trialSLC49A3
Miscellaneous
canSAR (ICR)SLC49A3 (select the gene name)
HarmonizomeSLC49A3
DataMed IndexSLC49A3
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC49A3
EVEXSLC49A3
GoPubMedSLC49A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:34:43 CEST 2020

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