Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC4A7 (solute carrier family 4 member 7)

Identity

Alias (NCBI)NBC2
NBC3
NBCN1
SBC2
SLC4A6
HGNC (Hugo) SLC4A7
HGNC Alias symbNBC3
SBC2
HGNC Previous nameSLC4A6
HGNC Previous namesolute carrier family 4, sodium bicarbonate cotransporter, member 7
LocusID (NCBI) 9497
Atlas_Id 53241
Location 3p24.1  [Link to chromosome band 3p24]
Location_base_pair Starts at 27372723 and ends at 27456778 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID4B (1q42.3) / SLC4A7 (3p24.1)CMC1 (3p24.1) / SLC4A7 (3p24.1)CYP4A11 (1p33) / SLC4A7 (3p24.1)
EOMES (3p24.1) / SLC4A7 (3p24.1)SLC4A7 (3p24.1) / SLC4A7 (3p24.1)SLC4A7 (3p24.1) / TYR (11q14.3)
SLC4A7 3p24.1 / TYR 11q14.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  inv(3)(p24p24) CMC1/SLC4A7


External links

Nomenclature
HGNC (Hugo)SLC4A7   11033
Cards
Entrez_Gene (NCBI)SLC4A7    solute carrier family 4 member 7
AliasesNBC2; NBC3; NBCN1; SBC2; 
SLC4A6
GeneCards (Weizmann)SLC4A7
Ensembl hg19 (Hinxton)ENSG00000033867 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000033867 [Gene_View]  ENSG00000033867 [Sequence]  chr3:27372723-27456778 [Contig_View]  SLC4A7 [Vega]
ICGC DataPortalENSG00000033867
TCGA cBioPortalSLC4A7
AceView (NCBI)SLC4A7
Genatlas (Paris)SLC4A7
SOURCE (Princeton)SLC4A7
Genetics Home Reference (NIH)SLC4A7
Genomic and cartography
GoldenPath hg38 (UCSC)SLC4A7  -     chr3:27372723-27456778 -  3p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC4A7  -     3p24.1   [Description]    (hg19-Feb_2009)
GoldenPathSLC4A7 - 3p24.1 [CytoView hg19]  SLC4A7 - 3p24.1 [CytoView hg38]
ImmunoBaseENSG00000033867
Genome Data Viewer NCBISLC4A7 [Mapview hg19]  
OMIM603353   
Gene and transcription
Genbank (Entrez)AA569234 AB012130 AF047033 AF053755 AF089726
RefSeq transcript (Entrez)NM_001258379 NM_001258380 NM_001321103 NM_001321104 NM_001321105 NM_001321106 NM_001321107 NM_001321108 NM_003615
Consensus coding sequences : CCDS (NCBI)SLC4A7
Gene ExpressionSLC4A7 [ NCBI-GEO ]   SLC4A7 [ EBI - ARRAY_EXPRESS ]   SLC4A7 [ SEEK ]   SLC4A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC4A7 [ Firebrowse - Broad ]
GenevisibleExpression of SLC4A7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9497
GTEX Portal (Tissue expression)SLC4A7
Human Protein AtlasENSG00000033867-SLC4A7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC4A7
Human Protein Atlas [tissue]ENSG00000033867-SLC4A7 [tissue]
HPRD04521
Protein Interaction databases
BioGRIDSLC4A7
STRING (EMBL)SLC4A7
ZODIACSLC4A7
Ontologies - Pathways
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC4A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:31:54 CEST 2021

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