Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC4A9 (solute carrier family 4 member 9)

Identity

Alias_namessolute carrier family 4, sodium bicarbonate cotransporter, member 9
Alias_symbol (synonym)AE4
Other alias
HGNC (Hugo) SLC4A9
LocusID (NCBI) 83697
Atlas_Id 73455
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140360202 and ends at 140375137 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC4A9   11035
Cards
Entrez_Gene (NCBI)SLC4A9  83697  solute carrier family 4 member 9
AliasesAE4
GeneCards (Weizmann)SLC4A9
Ensembl hg19 (Hinxton)ENSG00000113073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113073 [Gene_View]  chr5:140360202-140375137 [Contig_View]  SLC4A9 [Vega]
ICGC DataPortalENSG00000113073
TCGA cBioPortalSLC4A9
AceView (NCBI)SLC4A9
Genatlas (Paris)SLC4A9
WikiGenes83697
SOURCE (Princeton)SLC4A9
Genetics Home Reference (NIH)SLC4A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC4A9  -     chr5:140360202-140375137 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC4A9  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblSLC4A9 - 5q31.3 [CytoView hg19]  SLC4A9 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBISLC4A9 [Mapview hg19]  SLC4A9 [Mapview hg38]
OMIM610207   
Gene and transcription
Genbank (Entrez)AB032762 AF313465 AF332961 AF336237 BC136262
RefSeq transcript (Entrez)NM_001258426 NM_001258427 NM_001258428 NM_031467
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC4A9
Cluster EST : UnigeneHs.550313 [ NCBI ]
CGAP (NCI)Hs.550313
Alternative Splicing GalleryENSG00000113073
Gene ExpressionSLC4A9 [ NCBI-GEO ]   SLC4A9 [ EBI - ARRAY_EXPRESS ]   SLC4A9 [ SEEK ]   SLC4A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC4A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83697
GTEX Portal (Tissue expression)SLC4A9
Human Protein AtlasENSG00000113073-SLC4A9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q91   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q91
Splice isoforms : SwissVarQ96Q91
PhosPhoSitePlusQ96Q91
Domains : Interpro (EBI)Band3_cytoplasmic_dom    HCO3_transpt_C    HCO3_transpt_euk    Na/HCO3_transpt    PTrfase/Anion_transptr   
Domain families : Pfam (Sanger)Band_3_cyto (PF07565)    HCO3_cotransp (PF00955)   
Domain families : Pfam (NCBI)pfam07565    pfam00955   
Conserved Domain (NCBI)SLC4A9
DMDM Disease mutations83697
Blocks (Seattle)SLC4A9
SuperfamilyQ96Q91
Human Protein Atlas [tissue]ENSG00000113073-SLC4A9 [tissue]
Peptide AtlasQ96Q91
HPRD15393
IPIIPI00000234   IPI00292101   IPI00216571   IPI00922025   
Protein Interaction databases
DIP (DOE-UCLA)Q96Q91
IntAct (EBI)Q96Q91
FunCoupENSG00000113073
BioGRIDSLC4A9
STRING (EMBL)SLC4A9
ZODIACSLC4A9
Ontologies - Pathways
QuickGOQ96Q91
Ontology : AmiGOinorganic anion exchanger activity  plasma membrane  integral component of plasma membrane  anion transmembrane transporter activity  sodium:bicarbonate symporter activity  anion:anion antiporter activity  inorganic anion transport  bicarbonate transport  bicarbonate transport  sodium ion transmembrane transport  apical part of cell  regulation of intracellular pH  anion transmembrane transport  
Ontology : EGO-EBIinorganic anion exchanger activity  plasma membrane  integral component of plasma membrane  anion transmembrane transporter activity  sodium:bicarbonate symporter activity  anion:anion antiporter activity  inorganic anion transport  bicarbonate transport  bicarbonate transport  sodium ion transmembrane transport  apical part of cell  regulation of intracellular pH  anion transmembrane transport  
NDEx NetworkSLC4A9
Atlas of Cancer Signalling NetworkSLC4A9
Wikipedia pathwaysSLC4A9
Orthology - Evolution
OrthoDB83697
GeneTree (enSembl)ENSG00000113073
Phylogenetic Trees/Animal Genes : TreeFamSLC4A9
HOVERGENQ96Q91
HOGENOMQ96Q91
Homologs : HomoloGeneSLC4A9
Homology/Alignments : Family Browser (UCSC)SLC4A9
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC4A9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC4A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC4A9
dbVarSLC4A9
ClinVarSLC4A9
1000_GenomesSLC4A9 
Exome Variant ServerSLC4A9
ExAC (Exome Aggregation Consortium)ENSG00000113073
GNOMAD BrowserENSG00000113073
Genetic variants : HAPMAP83697
Genomic Variants (DGV)SLC4A9 [DGVbeta]
DECIPHERSLC4A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC4A9 
Mutations
ICGC Data PortalSLC4A9 
TCGA Data PortalSLC4A9 
Broad Tumor PortalSLC4A9
OASIS PortalSLC4A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC4A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC4A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch SLC4A9
DgiDB (Drug Gene Interaction Database)SLC4A9
DoCM (Curated mutations)SLC4A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC4A9 (select a term)
intoGenSLC4A9
Cancer3DSLC4A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610207   
Orphanet
MedgenSLC4A9
Genetic Testing Registry SLC4A9
NextProtQ96Q91 [Medical]
TSGene83697
GENETestsSLC4A9
Target ValidationSLC4A9
Huge Navigator SLC4A9 [HugePedia]
snp3D : Map Gene to Disease83697
BioCentury BCIQSLC4A9
ClinGenSLC4A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83697
Chemical/Pharm GKB GenePA35901
Clinical trialSLC4A9
Miscellaneous
canSAR (ICR)SLC4A9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC4A9
EVEXSLC4A9
GoPubMedSLC4A9
iHOPSLC4A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:42 CET 2017

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