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SLC50A1 (solute carrier family 50 member 1)

Identity

Alias_namesRAG1AP1
recombination activating gene 1 activating protein 1
solute carrier family 50 (sugar efflux transporter), member 1
Alias_symbol (synonym)SCP
RP11-540D14.5
slv
RZPDo834D038D
HsSWEET1
SWEET1
Other alias
HGNC (Hugo) SLC50A1
LocusID (NCBI) 55974
Atlas_Id 73456
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155135812 and ends at 155138858 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APTX (9p21.1) / SLC50A1 (1q22)SLC50A1 (1q22) / SLC1A2 (11p13)SLC50A1 (1q22) / SNHG1 (11q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC50A1   30657
Cards
Entrez_Gene (NCBI)SLC50A1  55974  solute carrier family 50 member 1
AliasesHsSWEET1; RAG1AP1; SCP; SWEET1; 
slv
GeneCards (Weizmann)SLC50A1
Ensembl hg19 (Hinxton)ENSG00000169241 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169241 [Gene_View]  chr1:155135812-155138858 [Contig_View]  SLC50A1 [Vega]
ICGC DataPortalENSG00000169241
TCGA cBioPortalSLC50A1
AceView (NCBI)SLC50A1
Genatlas (Paris)SLC50A1
WikiGenes55974
SOURCE (Princeton)SLC50A1
Genetics Home Reference (NIH)SLC50A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC50A1  -     chr1:155135812-155138858 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC50A1  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblSLC50A1 - 1q22 [CytoView hg19]  SLC50A1 - 1q22 [CytoView hg38]
Mapping of homologs : NCBISLC50A1 [Mapview hg19]  SLC50A1 [Mapview hg38]
OMIM613683   
Gene and transcription
Genbank (Entrez)AF126023 AF126024 AK289551 BC005943 BC009621
RefSeq transcript (Entrez)NM_001122837 NM_001122839 NM_001287586 NM_001287587 NM_001287588 NM_001287589 NM_001287590 NM_001287591 NM_001287592 NM_018845
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC50A1
Cluster EST : UnigeneHs.292154 [ NCBI ]
CGAP (NCI)Hs.292154
Alternative Splicing GalleryENSG00000169241
Gene ExpressionSLC50A1 [ NCBI-GEO ]   SLC50A1 [ EBI - ARRAY_EXPRESS ]   SLC50A1 [ SEEK ]   SLC50A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC50A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55974
GTEX Portal (Tissue expression)SLC50A1
Human Protein AtlasENSG00000169241-SLC50A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRV3
Splice isoforms : SwissVarQ9BRV3
PhosPhoSitePlusQ9BRV3
Domains : Interpro (EBI)SWEET_sugar_transpr   
Domain families : Pfam (Sanger)MtN3_slv (PF03083)   
Domain families : Pfam (NCBI)pfam03083   
Conserved Domain (NCBI)SLC50A1
DMDM Disease mutations55974
Blocks (Seattle)SLC50A1
SuperfamilyQ9BRV3
Human Protein Atlas [tissue]ENSG00000169241-SLC50A1 [tissue]
Peptide AtlasQ9BRV3
HPRD17427
IPIIPI00305185   IPI00514955   IPI00060847   IPI00005963   IPI00874062   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRV3
IntAct (EBI)Q9BRV3
FunCoupENSG00000169241
BioGRIDSLC50A1
STRING (EMBL)SLC50A1
ZODIACSLC50A1
Ontologies - Pathways
QuickGOQ9BRV3
Ontology : AmiGOGolgi membrane  nucleus  Golgi apparatus  plasma membrane  plasma membrane  carbohydrate transport  endomembrane system  glucose transport  integral component of membrane  carbohydrate transmembrane transport  glucoside transport  glucoside transmembrane transporter activity  positive regulation of gene expression, epigenetic  sugar transmembrane transporter activity  sugar transmembrane transporter activity  
Ontology : EGO-EBIGolgi membrane  nucleus  Golgi apparatus  plasma membrane  plasma membrane  carbohydrate transport  endomembrane system  glucose transport  integral component of membrane  carbohydrate transmembrane transport  glucoside transport  glucoside transmembrane transporter activity  positive regulation of gene expression, epigenetic  sugar transmembrane transporter activity  sugar transmembrane transporter activity  
NDEx NetworkSLC50A1
Atlas of Cancer Signalling NetworkSLC50A1
Wikipedia pathwaysSLC50A1
Orthology - Evolution
OrthoDB55974
GeneTree (enSembl)ENSG00000169241
Phylogenetic Trees/Animal Genes : TreeFamSLC50A1
HOVERGENQ9BRV3
HOGENOMQ9BRV3
Homologs : HomoloGeneSLC50A1
Homology/Alignments : Family Browser (UCSC)SLC50A1
Gene fusions - Rearrangements
Tumor Fusion PortalSLC50A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC50A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC50A1
dbVarSLC50A1
ClinVarSLC50A1
1000_GenomesSLC50A1 
Exome Variant ServerSLC50A1
ExAC (Exome Aggregation Consortium)ENSG00000169241
GNOMAD BrowserENSG00000169241
Genetic variants : HAPMAP55974
Genomic Variants (DGV)SLC50A1 [DGVbeta]
DECIPHERSLC50A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC50A1 
Mutations
ICGC Data PortalSLC50A1 
TCGA Data PortalSLC50A1 
Broad Tumor PortalSLC50A1
OASIS PortalSLC50A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC50A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC50A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC50A1
DgiDB (Drug Gene Interaction Database)SLC50A1
DoCM (Curated mutations)SLC50A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC50A1 (select a term)
intoGenSLC50A1
Cancer3DSLC50A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613683   
Orphanet
DisGeNETSLC50A1
MedgenSLC50A1
Genetic Testing Registry SLC50A1
NextProtQ9BRV3 [Medical]
TSGene55974
GENETestsSLC50A1
Target ValidationSLC50A1
Huge Navigator SLC50A1 [HugePedia]
snp3D : Map Gene to Disease55974
BioCentury BCIQSLC50A1
ClinGenSLC50A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55974
Chemical/Pharm GKB GenePA142671099
Clinical trialSLC50A1
Miscellaneous
canSAR (ICR)SLC50A1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC50A1
EVEXSLC50A1
GoPubMedSLC50A1
iHOPSLC50A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:12:43 CET 2017

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