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SLC50A1 (solute carrier family 50 member 1)

Identity

Alias (NCBI)HsSWEET1
RAG1AP1
SCP
SWEET1
slv
HGNC (Hugo) SLC50A1
HGNC Alias symbSCP
RP11-540D14.5
slv
RZPDo834D038D
HsSWEET1
SWEET1
HGNC Alias namestromal cell protein
HGNC Previous nameRAG1AP1
HGNC Previous namerecombination activating gene 1 activating protein 1
 solute carrier family 50 (sugar efflux transporter), member 1
LocusID (NCBI) 55974
Atlas_Id 73456
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155135852 and ends at 155138853 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APTX (9p21.1) / SLC50A1 (1q22)SLC50A1 (1q22) / SLC1A2 (11p13)SLC50A1 (1q22) / SNHG1 (11q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC50A1   30657
Cards
Entrez_Gene (NCBI)SLC50A1    solute carrier family 50 member 1
AliasesHsSWEET1; RAG1AP1; SCP; SWEET1; 
slv
GeneCards (Weizmann)SLC50A1
Ensembl hg19 (Hinxton)ENSG00000169241 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169241 [Gene_View]  ENSG00000169241 [Sequence]  chr1:155135852-155138853 [Contig_View]  SLC50A1 [Vega]
ICGC DataPortalENSG00000169241
TCGA cBioPortalSLC50A1
AceView (NCBI)SLC50A1
Genatlas (Paris)SLC50A1
SOURCE (Princeton)SLC50A1
Genetics Home Reference (NIH)SLC50A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC50A1  -     chr1:155135852-155138853 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC50A1  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathSLC50A1 - 1q22 [CytoView hg19]  SLC50A1 - 1q22 [CytoView hg38]
ImmunoBaseENSG00000169241
Genome Data Viewer NCBISLC50A1 [Mapview hg19]  
OMIM613683   
Gene and transcription
Genbank (Entrez)AF126023 AF126024 AK289551 BC005943 BC009621
RefSeq transcript (Entrez)NM_001122837 NM_001122839 NM_001287586 NM_001287587 NM_001287588 NM_001287589 NM_001287590 NM_001287591 NM_001287592 NM_018845
Consensus coding sequences : CCDS (NCBI)SLC50A1
Gene ExpressionSLC50A1 [ NCBI-GEO ]   SLC50A1 [ EBI - ARRAY_EXPRESS ]   SLC50A1 [ SEEK ]   SLC50A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC50A1 [ Firebrowse - Broad ]
GenevisibleExpression of SLC50A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55974
GTEX Portal (Tissue expression)SLC50A1
Human Protein AtlasENSG00000169241-SLC50A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRV3
PhosPhoSitePlusQ9BRV3
Domains : Interpro (EBI)SWEET_sugar_transpr   
Domain families : Pfam (Sanger)MtN3_slv (PF03083)   
Domain families : Pfam (NCBI)pfam03083   
Conserved Domain (NCBI)SLC50A1
SuperfamilyQ9BRV3
AlphaFold pdb e-kbQ9BRV3   
Human Protein Atlas [tissue]ENSG00000169241-SLC50A1 [tissue]
HPRD17427
Protein Interaction databases
DIP (DOE-UCLA)Q9BRV3
IntAct (EBI)Q9BRV3
BioGRIDSLC50A1
STRING (EMBL)SLC50A1
ZODIACSLC50A1
Ontologies - Pathways
QuickGOQ9BRV3
Ontology : AmiGOGolgi membrane  protein binding  Golgi apparatus  plasma membrane  plasma membrane  carbohydrate transport  hexose transmembrane transport  endomembrane system  integral component of membrane  glucoside transport  glucoside transmembrane transporter activity  sugar transmembrane transporter activity  
Ontology : EGO-EBIGolgi membrane  protein binding  Golgi apparatus  plasma membrane  plasma membrane  carbohydrate transport  hexose transmembrane transport  endomembrane system  integral component of membrane  glucoside transport  glucoside transmembrane transporter activity  sugar transmembrane transporter activity  
NDEx NetworkSLC50A1
Atlas of Cancer Signalling NetworkSLC50A1
Wikipedia pathwaysSLC50A1
Orthology - Evolution
OrthoDB55974
GeneTree (enSembl)ENSG00000169241
Phylogenetic Trees/Animal Genes : TreeFamSLC50A1
Homologs : HomoloGeneSLC50A1
Homology/Alignments : Family Browser (UCSC)SLC50A1
Gene fusions - Rearrangements
Fusion : QuiverSLC50A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC50A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC50A1
dbVarSLC50A1
ClinVarSLC50A1
MonarchSLC50A1
1000_GenomesSLC50A1 
Exome Variant ServerSLC50A1
GNOMAD BrowserENSG00000169241
Varsome BrowserSLC50A1
ACMGSLC50A1 variants
VarityQ9BRV3
Genomic Variants (DGV)SLC50A1 [DGVbeta]
DECIPHERSLC50A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC50A1 
Mutations
ICGC Data PortalSLC50A1 
TCGA Data PortalSLC50A1 
Broad Tumor PortalSLC50A1
OASIS PortalSLC50A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC50A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC50A1
Mutations and Diseases : HGMDSLC50A1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC50A1
DgiDB (Drug Gene Interaction Database)SLC50A1
DoCM (Curated mutations)SLC50A1
CIViC (Clinical Interpretations of Variants in Cancer)SLC50A1
Cancer3DSLC50A1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613683   
Orphanet
DisGeNETSLC50A1
MedgenSLC50A1
Genetic Testing Registry SLC50A1
NextProtQ9BRV3 [Medical]
GENETestsSLC50A1
Target ValidationSLC50A1
Huge Navigator SLC50A1 [HugePedia]
ClinGenSLC50A1
Clinical trials, drugs, therapy
MyCancerGenomeSLC50A1
Protein Interactions : CTDSLC50A1
Pharm GKB GenePA142671099
PharosQ9BRV3
Clinical trialSLC50A1
Miscellaneous
canSAR (ICR)SLC50A1
HarmonizomeSLC50A1
DataMed IndexSLC50A1
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC50A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:21:07 CEST 2021

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