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SLC51A (solute carrier family 51 alpha subunit)

Identity

Alias_namessolute carrier family 51, alpha subunit
Alias_symbol (synonym)OSTalpha
Other aliasOSTA
HGNC (Hugo) SLC51A
LocusID (NCBI) 200931
Atlas_Id 73457
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196216512 and ends at 196233430 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC51A   29955
Cards
Entrez_Gene (NCBI)SLC51A  200931  solute carrier family 51 alpha subunit
AliasesOSTA; OSTalpha
GeneCards (Weizmann)SLC51A
Ensembl hg19 (Hinxton)ENSG00000163959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163959 [Gene_View]  chr3:196216512-196233430 [Contig_View]  SLC51A [Vega]
ICGC DataPortalENSG00000163959
TCGA cBioPortalSLC51A
AceView (NCBI)SLC51A
Genatlas (Paris)SLC51A
WikiGenes200931
SOURCE (Princeton)SLC51A
Genetics Home Reference (NIH)SLC51A
Genomic and cartography
GoldenPath hg38 (UCSC)SLC51A  -     chr3:196216512-196233430 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC51A  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblSLC51A - 3q29 [CytoView hg19]  SLC51A - 3q29 [CytoView hg38]
Mapping of homologs : NCBISLC51A [Mapview hg19]  SLC51A [Mapview hg38]
OMIM612084   
Gene and transcription
Genbank (Entrez)AK172837 AK300996 AK310276 AY194243 BC029606
RefSeq transcript (Entrez)NM_152672
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC51A
Cluster EST : UnigeneHs.630585 [ NCBI ]
CGAP (NCI)Hs.630585
Alternative Splicing GalleryENSG00000163959
Gene ExpressionSLC51A [ NCBI-GEO ]   SLC51A [ EBI - ARRAY_EXPRESS ]   SLC51A [ SEEK ]   SLC51A [ MEM ]
Gene Expression Viewer (FireBrowse)SLC51A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200931
GTEX Portal (Tissue expression)SLC51A
Human Protein AtlasENSG00000163959-SLC51A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UW1
Splice isoforms : SwissVarQ86UW1
PhosPhoSitePlusQ86UW1
Domains : Interpro (EBI)Ostalpha/TMEM184C   
Domain families : Pfam (Sanger)Solute_trans_a (PF03619)   
Domain families : Pfam (NCBI)pfam03619   
Conserved Domain (NCBI)SLC51A
DMDM Disease mutations200931
Blocks (Seattle)SLC51A
SuperfamilyQ86UW1
Human Protein Atlas [tissue]ENSG00000163959-SLC51A [tissue]
Peptide AtlasQ86UW1
HPRD17810
IPIIPI00255771   IPI00925518   IPI00925776   IPI00925996   IPI00926220   
Protein Interaction databases
DIP (DOE-UCLA)Q86UW1
IntAct (EBI)Q86UW1
FunCoupENSG00000163959
BioGRIDSLC51A
STRING (EMBL)SLC51A
ZODIACSLC51A
Ontologies - Pathways
QuickGOQ86UW1
Ontology : AmiGOtransporter activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  plasma membrane  transport  bile acid and bile salt transport  bile acid and bile salt transport  integral component of membrane  integral component of membrane  protein homodimerization activity  protein complex  protein heterodimerization activity  
Ontology : EGO-EBItransporter activity  endoplasmic reticulum membrane  endoplasmic reticulum membrane  plasma membrane  transport  bile acid and bile salt transport  bile acid and bile salt transport  integral component of membrane  integral component of membrane  protein homodimerization activity  protein complex  protein heterodimerization activity  
Pathways : KEGGBile secretion   
NDEx NetworkSLC51A
Atlas of Cancer Signalling NetworkSLC51A
Wikipedia pathwaysSLC51A
Orthology - Evolution
OrthoDB200931
GeneTree (enSembl)ENSG00000163959
Phylogenetic Trees/Animal Genes : TreeFamSLC51A
HOVERGENQ86UW1
HOGENOMQ86UW1
Homologs : HomoloGeneSLC51A
Homology/Alignments : Family Browser (UCSC)SLC51A
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC51A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC51A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC51A
dbVarSLC51A
ClinVarSLC51A
1000_GenomesSLC51A 
Exome Variant ServerSLC51A
ExAC (Exome Aggregation Consortium)ENSG00000163959
GNOMAD BrowserENSG00000163959
Genetic variants : HAPMAP200931
Genomic Variants (DGV)SLC51A [DGVbeta]
DECIPHERSLC51A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC51A 
Mutations
ICGC Data PortalSLC51A 
TCGA Data PortalSLC51A 
Broad Tumor PortalSLC51A
OASIS PortalSLC51A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC51A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC51A
DgiDB (Drug Gene Interaction Database)SLC51A
DoCM (Curated mutations)SLC51A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC51A (select a term)
intoGenSLC51A
Cancer3DSLC51A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612084   
Orphanet
MedgenSLC51A
Genetic Testing Registry SLC51A
NextProtQ86UW1 [Medical]
TSGene200931
GENETestsSLC51A
Target ValidationSLC51A
Huge Navigator SLC51A [HugePedia]
snp3D : Map Gene to Disease200931
BioCentury BCIQSLC51A
ClinGenSLC51A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200931
Chemical/Pharm GKB GenePA166048991
Clinical trialSLC51A
Miscellaneous
canSAR (ICR)SLC51A (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC51A
EVEXSLC51A
GoPubMedSLC51A
iHOPSLC51A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:43 CET 2017

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