Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC51B (solute carrier family 51 beta subunit)

Identity

Alias_namessolute carrier family 51, beta subunit
Alias_symbol (synonym)OSTbeta
Other aliasOSTB
OSTBETA
HGNC (Hugo) SLC51B
LocusID (NCBI) 123264
Atlas_Id 73458
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65045370 and ends at 65053396 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC51B   29956
Cards
Entrez_Gene (NCBI)SLC51B  123264  solute carrier family 51 beta subunit
AliasesOSTB; OSTBETA
GeneCards (Weizmann)SLC51B
Ensembl hg19 (Hinxton)ENSG00000186198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186198 [Gene_View]  chr15:65045370-65053396 [Contig_View]  SLC51B [Vega]
ICGC DataPortalENSG00000186198
TCGA cBioPortalSLC51B
AceView (NCBI)SLC51B
Genatlas (Paris)SLC51B
WikiGenes123264
SOURCE (Princeton)SLC51B
Genetics Home Reference (NIH)SLC51B
Genomic and cartography
GoldenPath hg38 (UCSC)SLC51B  -     chr15:65045370-65053396 +  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC51B  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblSLC51B - 15q22.31 [CytoView hg19]  SLC51B - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBISLC51B [Mapview hg19]  SLC51B [Mapview hg38]
OMIM612085   
Gene and transcription
Genbank (Entrez)AA156136 AA621440 AI793107 AK129601 AY194242
RefSeq transcript (Entrez)NM_178859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC51B
Cluster EST : UnigeneHs.534533 [ NCBI ]
CGAP (NCI)Hs.534533
Alternative Splicing GalleryENSG00000186198
Gene ExpressionSLC51B [ NCBI-GEO ]   SLC51B [ EBI - ARRAY_EXPRESS ]   SLC51B [ SEEK ]   SLC51B [ MEM ]
Gene Expression Viewer (FireBrowse)SLC51B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123264
GTEX Portal (Tissue expression)SLC51B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UW2
Splice isoforms : SwissVarQ86UW2
PhosPhoSitePlusQ86UW2
Domains : Interpro (EBI)OSTbeta   
Domain families : Pfam (Sanger)OSTbeta (PF15048)   
Domain families : Pfam (NCBI)pfam15048   
Conserved Domain (NCBI)SLC51B
DMDM Disease mutations123264
Blocks (Seattle)SLC51B
SuperfamilyQ86UW2
Human Protein AtlasENSG00000186198
Peptide AtlasQ86UW2
HPRD17811
IPIIPI00328824   
Protein Interaction databases
DIP (DOE-UCLA)Q86UW2
IntAct (EBI)Q86UW2
FunCoupENSG00000186198
BioGRIDSLC51B
STRING (EMBL)SLC51B
ZODIACSLC51B
Ontologies - Pathways
QuickGOQ86UW2
Ontology : AmiGOtransporter activity  plasma membrane  bile acid and bile salt transport  integral component of membrane  regulation of protein stability  protein complex  protein heterodimerization activity  positive regulation of protein glycosylation  positive regulation of protein exit from endoplasmic reticulum  positive regulation of protein targeting to membrane  
Ontology : EGO-EBItransporter activity  plasma membrane  bile acid and bile salt transport  integral component of membrane  regulation of protein stability  protein complex  protein heterodimerization activity  positive regulation of protein glycosylation  positive regulation of protein exit from endoplasmic reticulum  positive regulation of protein targeting to membrane  
Pathways : KEGGBile secretion   
NDEx NetworkSLC51B
Atlas of Cancer Signalling NetworkSLC51B
Wikipedia pathwaysSLC51B
Orthology - Evolution
OrthoDB123264
GeneTree (enSembl)ENSG00000186198
Phylogenetic Trees/Animal Genes : TreeFamSLC51B
HOVERGENQ86UW2
HOGENOMQ86UW2
Homologs : HomoloGeneSLC51B
Homology/Alignments : Family Browser (UCSC)SLC51B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC51B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC51B
dbVarSLC51B
ClinVarSLC51B
1000_GenomesSLC51B 
Exome Variant ServerSLC51B
ExAC (Exome Aggregation Consortium)SLC51B (select the gene name)
Genetic variants : HAPMAP123264
Genomic Variants (DGV)SLC51B [DGVbeta]
DECIPHERSLC51B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC51B 
Mutations
ICGC Data PortalSLC51B 
TCGA Data PortalSLC51B 
Broad Tumor PortalSLC51B
OASIS PortalSLC51B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC51B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC51B
DgiDB (Drug Gene Interaction Database)SLC51B
DoCM (Curated mutations)SLC51B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC51B (select a term)
intoGenSLC51B
Cancer3DSLC51B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612085   
Orphanet
MedgenSLC51B
Genetic Testing Registry SLC51B
NextProtQ86UW2 [Medical]
TSGene123264
GENETestsSLC51B
Target ValidationSLC51B
Huge Navigator SLC51B [HugePedia]
snp3D : Map Gene to Disease123264
BioCentury BCIQSLC51B
ClinGenSLC51B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123264
Chemical/Pharm GKB GenePA166048992
Clinical trialSLC51B
Miscellaneous
canSAR (ICR)SLC51B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC51B
EVEXSLC51B
GoPubMedSLC51B
iHOPSLC51B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:23 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.