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SLC52A1 (solute carrier family 52 member 1)

Identity

Alias_namesGPR172B
G protein-coupled receptor 172B
solute carrier family 52 (riboflavin transporter), member 1
Alias_symbol (synonym)FLJ10060
GPCR42
PAR2
hRFT1
RFVT1
Other aliasRBFVD
RFT1
HGNC (Hugo) SLC52A1
LocusID (NCBI) 55065
Atlas_Id 73459
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 5032602 and ends at 5035432 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC52A1   30225
Cards
Entrez_Gene (NCBI)SLC52A1  55065  solute carrier family 52 member 1
AliasesGPCR42; GPR172B; PAR2; RBFVD; 
RFT1; RFVT1; hRFT1
GeneCards (Weizmann)SLC52A1
Ensembl hg19 (Hinxton)ENSG00000132517 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132517 [Gene_View]  chr17:5032602-5035432 [Contig_View]  SLC52A1 [Vega]
ICGC DataPortalENSG00000132517
TCGA cBioPortalSLC52A1
AceView (NCBI)SLC52A1
Genatlas (Paris)SLC52A1
WikiGenes55065
SOURCE (Princeton)SLC52A1
Genetics Home Reference (NIH)SLC52A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC52A1  -     chr17:5032602-5035432 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC52A1  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblSLC52A1 - 17p13.2 [CytoView hg19]  SLC52A1 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBISLC52A1 [Mapview hg19]  SLC52A1 [Mapview hg38]
OMIM607883   615026   
Gene and transcription
Genbank (Entrez)AB362533 AB362534 AK000922 AK023570 AK123566
RefSeq transcript (Entrez)NM_001104577 NM_017986
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC52A1
Cluster EST : UnigeneHs.632247 [ NCBI ]
CGAP (NCI)Hs.632247
Alternative Splicing GalleryENSG00000132517
Gene ExpressionSLC52A1 [ NCBI-GEO ]   SLC52A1 [ EBI - ARRAY_EXPRESS ]   SLC52A1 [ SEEK ]   SLC52A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC52A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55065
GTEX Portal (Tissue expression)SLC52A1
Human Protein AtlasENSG00000132517-SLC52A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWF4
Splice isoforms : SwissVarQ9NWF4
PhosPhoSitePlusQ9NWF4
Domains : Interpro (EBI)Riboflavin_transptr   
Domain families : Pfam (Sanger)DUF1011 (PF06237)   
Domain families : Pfam (NCBI)pfam06237   
Conserved Domain (NCBI)SLC52A1
DMDM Disease mutations55065
Blocks (Seattle)SLC52A1
SuperfamilyQ9NWF4
Human Protein Atlas [tissue]ENSG00000132517-SLC52A1 [tissue]
Peptide AtlasQ9NWF4
HPRD07432
IPIIPI00328787   IPI00914578   IPI01010732   IPI00382998   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWF4
IntAct (EBI)Q9NWF4
FunCoupENSG00000132517
BioGRIDSLC52A1
STRING (EMBL)SLC52A1
ZODIACSLC52A1
Ontologies - Pathways
QuickGOQ9NWF4
Ontology : AmiGOvirus receptor activity  plasma membrane  integral component of plasma membrane  riboflavin metabolic process  riboflavin transporter activity  riboflavin transporter activity  riboflavin transport  viral entry into host cell  
Ontology : EGO-EBIvirus receptor activity  plasma membrane  integral component of plasma membrane  riboflavin metabolic process  riboflavin transporter activity  riboflavin transporter activity  riboflavin transport  viral entry into host cell  
NDEx NetworkSLC52A1
Atlas of Cancer Signalling NetworkSLC52A1
Wikipedia pathwaysSLC52A1
Orthology - Evolution
OrthoDB55065
GeneTree (enSembl)ENSG00000132517
Phylogenetic Trees/Animal Genes : TreeFamSLC52A1
HOVERGENQ9NWF4
HOGENOMQ9NWF4
Homologs : HomoloGeneSLC52A1
Homology/Alignments : Family Browser (UCSC)SLC52A1
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC52A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC52A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC52A1
dbVarSLC52A1
ClinVarSLC52A1
1000_GenomesSLC52A1 
Exome Variant ServerSLC52A1
ExAC (Exome Aggregation Consortium)ENSG00000132517
GNOMAD BrowserENSG00000132517
Genetic variants : HAPMAP55065
Genomic Variants (DGV)SLC52A1 [DGVbeta]
DECIPHERSLC52A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC52A1 
Mutations
ICGC Data PortalSLC52A1 
TCGA Data PortalSLC52A1 
Broad Tumor PortalSLC52A1
OASIS PortalSLC52A1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC52A1
BioMutasearch SLC52A1
DgiDB (Drug Gene Interaction Database)SLC52A1
DoCM (Curated mutations)SLC52A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC52A1 (select a term)
intoGenSLC52A1
Cancer3DSLC52A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607883    615026   
Orphanet23032   
MedgenSLC52A1
Genetic Testing Registry SLC52A1
NextProtQ9NWF4 [Medical]
TSGene55065
GENETestsSLC52A1
Target ValidationSLC52A1
Huge Navigator SLC52A1 [HugePedia]
snp3D : Map Gene to Disease55065
BioCentury BCIQSLC52A1
ClinGenSLC52A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55065
Chemical/Pharm GKB GenePA134991217
Clinical trialSLC52A1
Miscellaneous
canSAR (ICR)SLC52A1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC52A1
EVEXSLC52A1
GoPubMedSLC52A1
iHOPSLC52A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:43 CET 2017

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