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SLC52A2 (solute carrier family 52 member 2)

Identity

Alias_namesGPR172A
G protein-coupled receptor 172A
solute carrier family 52 (riboflavin transporter), member 2
Alias_symbol (synonym)FLJ11856
PAR1
GPCR41
D15Ertd747e
RFVT2
hRFT3
Other aliasBVVLS2
RFT3
HGNC (Hugo) SLC52A2
LocusID (NCBI) 79581
Atlas_Id 73460
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144358581 and ends at 144361286 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC52A2   30224
Cards
Entrez_Gene (NCBI)SLC52A2  79581  solute carrier family 52 member 2
AliasesBVVLS2; D15Ertd747e; GPCR41; GPR172A; 
PAR1; RFT3; RFVT2; hRFT3
GeneCards (Weizmann)SLC52A2
Ensembl hg19 (Hinxton)ENSG00000185803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185803 [Gene_View]  chr8:144358581-144361286 [Contig_View]  SLC52A2 [Vega]
ICGC DataPortalENSG00000185803
TCGA cBioPortalSLC52A2
AceView (NCBI)SLC52A2
Genatlas (Paris)SLC52A2
WikiGenes79581
SOURCE (Princeton)SLC52A2
Genetics Home Reference (NIH)SLC52A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC52A2  -     chr8:144358581-144361286 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC52A2  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblSLC52A2 - 8q24.3 [CytoView hg19]  SLC52A2 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBISLC52A2 [Mapview hg19]  SLC52A2 [Mapview hg38]
OMIM607882   614707   
Gene and transcription
Genbank (Entrez)AB522904 AK021918 AK027888 AK291581 AK303822
RefSeq transcript (Entrez)NM_001253815 NM_001253816 NM_024531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC52A2
Cluster EST : UnigeneHs.731710 [ NCBI ]
CGAP (NCI)Hs.731710
Alternative Splicing GalleryENSG00000185803
Gene ExpressionSLC52A2 [ NCBI-GEO ]   SLC52A2 [ EBI - ARRAY_EXPRESS ]   SLC52A2 [ SEEK ]   SLC52A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC52A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79581
GTEX Portal (Tissue expression)SLC52A2
Human Protein AtlasENSG00000185803-SLC52A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAB3  [Sequence]  [Exons]&nbs0;&nbSp;=A href=http://www.nextprot.org/db/entry/NX_Q9HAB3/medical TARGET=Nextprot-Medical rel=nofollow>[Medical]  [Publications]
With graphics : InterProQ9HAB3
Splice isoforms : SwissVarQ9HAB3
PhosPhoSitePlusQ9HAB3
Domains : Interpro (EBI)Riboflavin_transptr   
Domain families : Pfam (Sanger)DUF1011 (PF06237)   
Domain families : Pfam (NCBI)pfam06237   
Conserved Domain (NCBI)SLC52A2
DMDM Disease mutations79581
Blocks (Seattle)SLC52A2
SuperfamilyQ9HAB3
Human Protein Atlas [tissue]ENSG00000185803-SLC52A2 [tissue]
Peptide AtlasQ9HAB3
HPRD07431
IPIIPI00002171   IPI01011278   IPI00383003   IPI00985279   IPI00976870   IPI00977970   IPI00982980   IPI00976250   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAB3
IntAct (EBI)Q9HAB3
FunCoupENSG00000185803
BioGRIDSLC52A2
STRING (EMBL)SLC52A2
ZODIACSLC52A2
Ontologies - Pathways
QuickGOQ9HAB3
Ontology : AmiGOvirus receptor activity  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  riboflavin metabolic process  riboflavin transporter activity  riboflavin transporter activity  riboflavin transport  viral entry into host cell  
Ontology : EGO-EBIvirus receptor activity  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  riboflavin metabolic process  riboflavin transporter activity  riboflavin transporter activity  riboflavin transport  viral entry into host cell  
NDEx NetworkSLC52A2
Atlas of Cancer Signalling NetworkSLC52A2
Wikipedia pathwaysSLC52A2
Orthology - Evolution
OrthoDB79581
GeneTree (enSembl)ENSG00000185803
Phylogenetic Trees/Animal Genes : TreeFamSLC52A2
HOVERGENQ9HAB3
HOGENOMQ9HAB3
Homologs : HomoloGeneSLC52A2
Homology/Alignments : Family Browser (UCSC)SLC52A2
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC52A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC52A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC52A2
dbVarSLC52A2
ClinVarSLC52A2
1000_GenomesSLC52A2 
Exome Variant ServerSLC52A2
ExAC (Exome Aggregation Consortium)ENSG00000185803
GNOMAD BrowserENSG00000185803
Genetic variants : HAPMAP79581
Genomic Variants (DGV)SLC52A2 [DGVbeta]
DECIPHERSLC52A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC52A2 
Mutations
ICGC Data PortalSLC52A2 
TCGA Data PortalSLC52A2 
Broad Tumor PortalSLC52A2
OASIS PortalSLC52A2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC52A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC52A2
DgiDB (Drug Gene Interaction Database)SLC52A2
DoCM (Curated mutations)4TD>SLC52A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC52A2 (select a term)
intoGenSLC52A2
Cancer3DSLC52A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607882    614707   
Orphanet12856   
MedgenSLC52A2
Genetic Testing Registry SLC52A2
NextProtQ9HAB3 [Medical]
TSGene79581
GENETestsSLC52A2
Target ValidationSLC52A2
Huge Navigator SLC52A2 [HugePedia]
snp3D : Map Gene to Disease79581
BioCentury BCIQSLC52A2
ClinGenSLC52A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79581
Chemical/Pharm GKB GenePA134982935
Clinical trialSLC52A2
Miscellaneous
canSAR (ICR)SLC52A2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC52A2
EVEXSLC52A2
GoPubMedSLC52A2
iHOPSLC52A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:43 CET 2017

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