SLC52A3 (solute carrier family 52 member 3)

2010-10-01  

Identity

HGNC
LOCATION
20p13
LOCUSID
ALIAS
BVVLS,BVVLS1,C20orf54,RFT2,RFVT3,bA371L19.1,hRFT2

Other Information

Locus ID:

NCBI: 113278
MIM: 613350
HGNC: 16187
Ensembl: ENSG00000101276

Variants:

dbSNP: 113278
ClinVar: 113278
TCGA: ENSG00000101276
COSMIC: SLC52A3

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000101276ENST00000217254Q9NQ40
ENSG00000101276ENST00000381944Q9NQ40
ENSG00000101276ENST00000488495Q9NQ40
ENSG00000101276ENST00000645534Q9NQ40

Expression (GTEx)

0
10
20
30
40
50
60
70
80

Pathways

PathwaySourceExternal ID
Vitamin digestion and absorptionKEGGko04977
Vitamin digestion and absorptionKEGGhsa04977
MetabolismREACTOMER-HSA-1430728
Metabolism of vitamins and cofactorsREACTOMER-HSA-196854
Metabolism of water-soluble vitamins and cofactorsREACTOMER-HSA-196849
Vitamin B2 (riboflavin) metabolismREACTOMER-HSA-196843

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
331894042021BVVL/ FL: features caused by SLC52A3 mutations; WDFY4 and TNFSF13B may be novel causative genes.2
342239922021Promotion of rs3746804 (p. L267P) polymorphism to intracellular SLC52A3a trafficking and riboflavin transportation in esophageal cancer cells.0
343846722021Three cases of adult-onset Brown-Vialetto-Van Laere syndrome: Novel variants in SLC52A3 gene and MRI abnormalities.3
331894042021BVVL/ FL: features caused by SLC52A3 mutations; WDFY4 and TNFSF13B may be novel causative genes.2
342239922021Promotion of rs3746804 (p. L267P) polymorphism to intracellular SLC52A3a trafficking and riboflavin transportation in esophageal cancer cells.0
343846722021Three cases of adult-onset Brown-Vialetto-Van Laere syndrome: Novel variants in SLC52A3 gene and MRI abnormalities.3
306665172020An Association and Meta-Analysis of Esophageal Squamous Cell Carcinoma Risk Associated with PLCE1 rs2274223, C20orf54 rs13042395 and RUNX1 rs2014300 Polymorphisms.0
328883892020Functional variation of SLC52A3 rs13042395 predicts survival of Chinese gastric cancer patients.2
306665172020An Association and Meta-Analysis of Esophageal Squamous Cell Carcinoma Risk Associated with PLCE1 rs2274223, C20orf54 rs13042395 and RUNX1 rs2014300 Polymorphisms.0
328883892020Functional variation of SLC52A3 rs13042395 predicts survival of Chinese gastric cancer patients.2
305535312019Mutation screening of SLC52A3, C19orf12, and TARDBP in Iranian ALS patients.4
307933232019An update on the genetics, clinical presentation, and pathomechanisms of human riboflavin transporter deficiency.33
305535312019Mutation screening of SLC52A3, C19orf12, and TARDBP in Iranian ALS patients.4
307933232019An update on the genetics, clinical presentation, and pathomechanisms of human riboflavin transporter deficiency.33
294289662018SLC52A3 expression is activated by NF-κB p65/Rel-B and serves as a prognostic biomarker in esophageal cancer.26

Citation

Dessen P

SLC52A3 (solute carrier family 52 member 3)

Atlas Genet Cytogenet Oncol Haematol. 2010-10-01

Online version: http://atlasgeneticsoncology.org/gene/51683/slc52a3