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SLC5A10 (solute carrier family 5 member 10)

Identity

Alias_namessolute carrier family 5 (sodium/glucose cotransporter), member 10
solute carrier family 5 (sodium/sugar cotransporter), member 10
Alias_symbol (synonym)SGLT5
Other aliasSGLT-5
HGNC (Hugo) SLC5A10
LocusID (NCBI) 125206
Atlas_Id 73461
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18952165 and ends at 19020691 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC5A10 (17p11.2) / FGG (4q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC5A10   23155
Cards
Entrez_Gene (NCBI)SLC5A10  125206  solute carrier family 5 member 10
AliasesSGLT-5; SGLT5
GeneCards (Weizmann)SLC5A10
Ensembl hg19 (Hinxton)ENSG00000154025 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154025 [Gene_View]  chr17:18952165-19020691 [Contig_View]  SLC5A10 [Vega]
ICGC DataPortalENSG00000154025
TCGA cBioPortalSLC5A10
AceView (NCBI)SLC5A10
Genatlas (Paris)SLC5A10
WikiGenes125206
SOURCE (Princeton)SLC5A10
Genetics Home Reference (NIH)SLC5A10
Genomic and cartography
GoldenPath hg38 (UCSC)SLC5A10  -     chr17:18952165-19020691 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC5A10  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblSLC5A10 - 17p11.2 [CytoView hg19]  SLC5A10 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBISLC5A10 [Mapview hg19]  SLC5A10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA745934 AK057946 AK298345 BC034380 BC039868
RefSeq transcript (Entrez)NM_001042450 NM_001270648 NM_001270649 NM_001282417 NM_152351
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC5A10
Cluster EST : UnigeneHs.462418 [ NCBI ]
CGAP (NCI)Hs.462418
Alternative Splicing GalleryENSG00000154025
Gene ExpressionSLC5A10 [ NCBI-GEO ]   SLC5A10 [ EBI - ARRAY_EXPRESS ]   SLC5A10 [ SEEK ]   SLC5A10 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC5A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125206
GTEX Portal (Tissue expression)SLC5A10
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJK1
Splice isoforms : SwissVarA0PJK1
PhosPhoSitePlusA0PJK1
Domaine pattern : Prosite (Expaxy)NA_SOLUT_SYMP_2 (PS00457)    NA_SOLUT_SYMP_3 (PS50283)   
Domains : Interpro (EBI)Na/solute_symporter    Na/solute_symporter_CS   
Domain families : Pfam (Sanger)SSF (PF00474)   
Domain families : Pfam (NCBI)pfam00474   
Conserved Domain (NCBI)SLC5A10
DMDM Disease mutations125206
Blocks (Seattle)SLC5A10
SuperfamilyA0PJK1
Human Protein AtlasENSG00000154025
Peptide AtlasA0PJK1
HPRD15394
IPIIPI00441079   IPI00791625   IPI00217554   IPI00873252   IPI00888822   
Protein Interaction databases
DIP (DOE-UCLA)A0PJK1
IntAct (EBI)A0PJK1
FunCoupENSG00000154025
BioGRIDSLC5A10
STRING (EMBL)SLC5A10
ZODIACSLC5A10
Ontologies - Pathways
QuickGOA0PJK1
Ontology : AmiGOglucose:sodium symporter activity  plasma membrane  integral component of plasma membrane  sodium ion transport  hexose transport  solute:sodium symporter activity  sodium ion transmembrane transport  extracellular exosome  glucose transmembrane transport  
Ontology : EGO-EBIglucose:sodium symporter activity  plasma membrane  integral component of plasma membrane  sodium ion transport  hexose transport  solute:sodium symporter activity  sodium ion transmembrane transport  extracellular exosome  glucose transmembrane transport  
NDEx NetworkSLC5A10
Atlas of Cancer Signalling NetworkSLC5A10
Wikipedia pathwaysSLC5A10
Orthology - Evolution
OrthoDB125206
GeneTree (enSembl)ENSG00000154025
Phylogenetic Trees/Animal Genes : TreeFamSLC5A10
HOVERGENA0PJK1
HOGENOMA0PJK1
Homologs : HomoloGeneSLC5A10
Homology/Alignments : Family Browser (UCSC)SLC5A10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC5A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC5A10
dbVarSLC5A10
ClinVarSLC5A10
1000_GenomesSLC5A10 
Exome Variant ServerSLC5A10
ExAC (Exome Aggregation Consortium)SLC5A10 (select the gene name)
Genetic variants : HAPMAP125206
Genomic Variants (DGV)SLC5A10 [DGVbeta]
DECIPHERSLC5A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC5A10 
Mutations
ICGC Data PortalSLC5A10 
TCGA Data PortalSLC5A10 
Broad Tumor PortalSLC5A10
OASIS PortalSLC5A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC5A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC5A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC5A10
DgiDB (Drug Gene Interaction Database)SLC5A10
DoCM (Curated mutations)SLC5A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC5A10 (select a term)
intoGenSLC5A10
Cancer3DSLC5A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC5A10
Genetic Testing Registry SLC5A10
NextProtA0PJK1 [Medical]
TSGene125206
GENETestsSLC5A10
Target ValidationSLC5A10
Huge Navigator SLC5A10 [HugePedia]
snp3D : Map Gene to Disease125206
BioCentury BCIQSLC5A10
ClinGenSLC5A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125206
Chemical/Pharm GKB GenePA134940254
Clinical trialSLC5A10
Miscellaneous
canSAR (ICR)SLC5A10 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC5A10
EVEXSLC5A10
GoPubMedSLC5A10
iHOPSLC5A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:16 CEST 2017

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