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SLC5A11 (solute carrier family 5 member 11)

Identity

Alias_namessolute carrier family 5 (sodium/glucose cotransporter), member 11
solute carrier family 5 (sodium/inositol cotransporter), member 11
Alias_symbol (synonym)KST1
SMIT2
SGLT6
Other aliasRKST1
HGNC (Hugo) SLC5A11
LocusID (NCBI) 115584
Atlas_Id 73462
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 24845863 and ends at 24911628 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCALD (8q22.3) / SLC5A11 (16p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC5A11   23091
Cards
Entrez_Gene (NCBI)SLC5A11  115584  solute carrier family 5 member 11
AliasesKST1; RKST1; SGLT6; SMIT2
GeneCards (Weizmann)SLC5A11
Ensembl hg19 (Hinxton)ENSG00000158865 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158865 [Gene_View]  chr16:24845863-24911628 [Contig_View]  SLC5A11 [Vega]
ICGC DataPortalENSG00000158865
TCGA cBioPortalSLC5A11
AceView (NCBI)SLC5A11
Genatlas (Paris)SLC5A11
WikiGenes115584
SOURCE (Princeton)SLC5A11
Genetics Home Reference (NIH)SLC5A11
Genomic and cartography
GoldenPath hg38 (UCSC)SLC5A11  -     chr16:24845863-24911628 +  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC5A11  -     16p12.1   [Description]    (hg19-Feb_2009)
EnsemblSLC5A11 - 16p12.1 [CytoView hg19]  SLC5A11 - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBISLC5A11 [Mapview hg19]  SLC5A11 [Mapview hg38]
OMIM610238   
Gene and transcription
Genbank (Entrez)AA772233 AF292385 AJ305237 AK125267 AK295427
RefSeq transcript (Entrez)NM_001258411 NM_001258412 NM_001258413 NM_001258414 NM_052944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC5A11
Cluster EST : UnigeneHs.164118 [ NCBI ]
CGAP (NCI)Hs.164118
Alternative Splicing GalleryENSG00000158865
Gene ExpressionSLC5A11 [ NCBI-GEO ]   SLC5A11 [ EBI - ARRAY_EXPRESS ]   SLC5A11 [ SEEK ]   SLC5A11 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC5A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115584
GTEX Portal (Tissue expression)SLC5A11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWX8
Splice isoforms : SwissVarQ8WWX8
PhosPhoSitePlusQ8WWX8
Domaine pattern : Prosite (Expaxy)NA_SOLUT_SYMP_3 (PS50283)   
Domains : Interpro (EBI)Na/solute_symporter   
Domain families : Pfam (Sanger)SSF (PF00474)   
Domain families : Pfam (NCBI)pfam00474   
Conserved Domain (NCBI)SLC5A11
DMDM Disease mutations115584
Blocks (Seattle)SLC5A11
SuperfamilyQ8WWX8
Human Protein AtlasENSG00000158865
Peptide AtlasQ8WWX8
IPIIPI00410320   IPI00890705   IPI00644537   IPI00445932   IPI00922932   IPI00807469   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWX8
IntAct (EBI)Q8WWX8
FunCoupENSG00000158865
BioGRIDSLC5A11
STRING (EMBL)SLC5A11
ZODIACSLC5A11
Ontologies - Pathways
QuickGOQ8WWX8
Ontology : AmiGOglucose:sodium symporter activity  protein binding  plasma membrane  integral component of plasma membrane  sodium ion transport  apoptotic process  polyol transmembrane transporter activity  polyol transport  glucose transmembrane transport  
Ontology : EGO-EBIglucose:sodium symporter activity  protein binding  plasma membrane  integral component of plasma membrane  sodium ion transport  apoptotic process  polyol transmembrane transporter activity  polyol transport  glucose transmembrane transport  
NDEx NetworkSLC5A11
Atlas of Cancer Signalling NetworkSLC5A11
Wikipedia pathwaysSLC5A11
Orthology - Evolution
OrthoDB115584
GeneTree (enSembl)ENSG00000158865
Phylogenetic Trees/Animal Genes : TreeFamSLC5A11
HOVERGENQ8WWX8
HOGENOMQ8WWX8
Homologs : HomoloGeneSLC5A11
Homology/Alignments : Family Browser (UCSC)SLC5A11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC5A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC5A11
dbVarSLC5A11
ClinVarSLC5A11
1000_GenomesSLC5A11 
Exome Variant ServerSLC5A11
ExAC (Exome Aggregation Consortium)SLC5A11 (select the gene name)
Genetic variants : HAPMAP115584
Genomic Variants (DGV)SLC5A11 [DGVbeta]
DECIPHERSLC5A11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC5A11 
Mutations
ICGC Data PortalSLC5A11 
TCGA Data PortalSLC5A11 
Broad Tumor PortalSLC5A11
OASIS PortalSLC5A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC5A11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC5A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC5A11
DgiDB (Drug Gene Interaction Database)SLC5A11
DoCM (Curated mutations)SLC5A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC5A11 (select a term)
intoGenSLC5A11
Cancer3DSLC5A11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610238   
Orphanet
MedgenSLC5A11
Genetic Testing Registry SLC5A11
NextProtQ8WWX8 [Medical]
TSGene115584
GENETestsSLC5A11
Target ValidationSLC5A11
Huge Navigator SLC5A11 [HugePedia]
snp3D : Map Gene to Disease115584
BioCentury BCIQSLC5A11
ClinGenSLC5A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115584
Chemical/Pharm GKB GenePA134923660
Clinical trialSLC5A11
Miscellaneous
canSAR (ICR)SLC5A11 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC5A11
EVEXSLC5A11
GoPubMedSLC5A11
iHOPSLC5A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:16 CEST 2017

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