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SLC5A4-AS1 (SLC5A4 antisense RNA 1)

Identity

Alias_symbol (synonym)RP1-90G24.10
Other alias-
HGNC (Hugo) SLC5A4-AS1
LocusID (NCBI) 110806273
Atlas_Id 79722
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32271883 and ends at 32273615 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SLC5A4-AS1   53163
Cards
Entrez_Gene (NCBI)SLC5A4-AS1  110806273  SLC5A4 antisense RNA 1
Aliases
GeneCards (Weizmann)SLC5A4-AS1
Ensembl hg19 (Hinxton)ENSG00000242082 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242082 [Gene_View]  chr22:32271883-32273615 [Contig_View]  SLC5A4-AS1 [Vega]
ICGC DataPortalENSG00000242082
TCGA cBioPortalSLC5A4-AS1
AceView (NCBI)SLC5A4-AS1
Genatlas (Paris)SLC5A4-AS1
WikiGenes110806273
SOURCE (Princeton)SLC5A4-AS1
Genetics Home Reference (NIH)SLC5A4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC5A4-AS1  -     chr22:32271883-32273615 +  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC5A4-AS1  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblSLC5A4-AS1 - 22q12.3 [CytoView hg19]  SLC5A4-AS1 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBISLC5A4-AS1 [Mapview hg19]  SLC5A4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036751 BC148206 BX643577
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC5A4-AS1
Cluster EST : UnigeneHs.737639 [ NCBI ]
CGAP (NCI)Hs.737639
Alternative Splicing GalleryENSG00000242082
Gene ExpressionSLC5A4-AS1 [ NCBI-GEO ]   SLC5A4-AS1 [ EBI - ARRAY_EXPRESS ]   SLC5A4-AS1 [ SEEK ]   SLC5A4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC5A4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)110806273
GTEX Portal (Tissue expression)SLC5A4-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC5A4-AS1
DMDM Disease mutations110806273
Blocks (Seattle)SLC5A4-AS1
Human Protein AtlasENSG00000242082
Protein Interaction databases
FunCoupENSG00000242082
BioGRIDSLC5A4-AS1
STRING (EMBL)SLC5A4-AS1
ZODIACSLC5A4-AS1
Ontologies - Pathways
Huge Navigator SLC5A4-AS1 [HugePedia]
snp3D : Map Gene to Disease110806273
BioCentury BCIQSLC5A4-AS1
ClinGenSLC5A4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD110806273
Clinical trialSLC5A4-AS1
Miscellaneous
canSAR (ICR)SLC5A4-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC5A4-AS1
EVEXSLC5A4-AS1
GoPubMedSLC5A4-AS1
iHOPSLC5A4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:16 CEST 2017

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