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SLC5A4 (solute carrier family 5 member 4)

Identity

Alias_namessolute carrier family 5 (low affinity glucose cotransporter), member 4
solute carrier family 5 (glucose activated ion channel), member 4
Alias_symbol (synonym)SAAT1
SGLT3
DJ90G24.4
Other alias
HGNC (Hugo) SLC5A4
LocusID (NCBI) 6527
Atlas_Id 73464
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 32218476 and ends at 32255331 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC5A4   11039
Cards
Entrez_Gene (NCBI)SLC5A4  6527  solute carrier family 5 member 4
AliasesDJ90G24.4; SAAT1; SGLT3
GeneCards (Weizmann)SLC5A4
Ensembl hg19 (Hinxton)ENSG00000100191 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100191 [Gene_View]  chr22:32218476-32255331 [Contig_View]  SLC5A4 [Vega]
ICGC DataPortalENSG00000100191
TCGA cBioPortalSLC5A4
AceView (NCBI)SLC5A4
Genatlas (Paris)SLC5A4
WikiGenes6527
SOURCE (Princeton)SLC5A4
Genetics Home Reference (NIH)SLC5A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC5A4  -     chr22:32218476-32255331 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC5A4  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblSLC5A4 - 22q12.3 [CytoView hg19]  SLC5A4 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBISLC5A4 [Mapview hg19]  SLC5A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ133127 BC146451 BC153069 GQ292716 JQ340171
RefSeq transcript (Entrez)NM_014227
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC5A4
Cluster EST : UnigeneHs.130101 [ NCBI ]
CGAP (NCI)Hs.130101
Alternative Splicing GalleryENSG00000100191
Gene ExpressionSLC5A4 [ NCBI-GEO ]   SLC5A4 [ EBI - ARRAY_EXPRESS ]   SLC5A4 [ SEEK ]   SLC5A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC5A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6527
GTEX Portal (Tissue expression)SLC5A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY91   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY91
Splice isoforms : SwissVarQ9NY91
PhosPhoSitePlusQ9NY91
Domaine pattern : Prosite (Expaxy)NA_SOLUT_SYMP_1 (PS00456)    NA_SOLUT_SYMP_2 (PS00457)    NA_SOLUT_SYMP_3 (PS50283)   
Domains : Interpro (EBI)Na/solute_symporter    Na/solute_symporter_CS   
Domain families : Pfam (Sanger)SSF (PF00474)   
Domain families : Pfam (NCBI)pfam00474   
Conserved Domain (NCBI)SLC5A4
DMDM Disease mutations6527
Blocks (Seattle)SLC5A4
SuperfamilyQ9NY91
Human Protein AtlasENSG00000100191
Peptide AtlasQ9NY91
HPRD10238
IPIIPI00218248   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY91
IntAct (EBI)Q9NY91
FunCoupENSG00000100191
BioGRIDSLC5A4
STRING (EMBL)SLC5A4
ZODIACSLC5A4
Ontologies - Pathways
QuickGOQ9NY91
Ontology : AmiGOglucose:sodium symporter activity  integral component of plasma membrane  sodium ion transport  glucose transmembrane transport  
Ontology : EGO-EBIglucose:sodium symporter activity  integral component of plasma membrane  sodium ion transport  glucose transmembrane transport  
NDEx NetworkSLC5A4
Atlas of Cancer Signalling NetworkSLC5A4
Wikipedia pathwaysSLC5A4
Orthology - Evolution
OrthoDB6527
GeneTree (enSembl)ENSG00000100191
Phylogenetic Trees/Animal Genes : TreeFamSLC5A4
HOVERGENQ9NY91
HOGENOMQ9NY91
Homologs : HomoloGeneSLC5A4
Homology/Alignments : Family Browser (UCSC)SLC5A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC5A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC5A4
dbVarSLC5A4
ClinVarSLC5A4
1000_GenomesSLC5A4 
Exome Variant ServerSLC5A4
ExAC (Exome Aggregation Consortium)SLC5A4 (select the gene name)
Genetic variants : HAPMAP6527
Genomic Variants (DGV)SLC5A4 [DGVbeta]
DECIPHERSLC5A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC5A4 
Mutations
ICGC Data PortalSLC5A4 
TCGA Data PortalSLC5A4 
Broad Tumor PortalSLC5A4
OASIS PortalSLC5A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC5A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC5A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC5A4
DgiDB (Drug Gene Interaction Database)SLC5A4
DoCM (Curated mutations)SLC5A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC5A4 (select a term)
intoGenSLC5A4
Cancer3DSLC5A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC5A4
Genetic Testing Registry SLC5A4
NextProtQ9NY91 [Medical]
TSGene6527
GENETestsSLC5A4
Huge Navigator SLC5A4 [HugePedia]
snp3D : Map Gene to Disease6527
BioCentury BCIQSLC5A4
ClinGenSLC5A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6527
Chemical/Pharm GKB GenePA35904
Clinical trialSLC5A4
Miscellaneous
canSAR (ICR)SLC5A4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC5A4
EVEXSLC5A4
GoPubMedSLC5A4
iHOPSLC5A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:53:45 CEST 2017

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