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SLC5A9 (solute carrier family 5 member 9)

Identity

Alias_namessolute carrier family 5 (sodium/glucose cotransporter), member 9
solute carrier family 5 (sodium/sugar cotransporter), member 9
Alias_symbol (synonym)SGLT4
Other alias
HGNC (Hugo) SLC5A9
LocusID (NCBI) 200010
Atlas_Id 73466
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 48222685 and ends at 48248644 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC5A9   22146
Cards
Entrez_Gene (NCBI)SLC5A9  200010  solute carrier family 5 member 9
AliasesSGLT4
GeneCards (Weizmann)SLC5A9
Ensembl hg19 (Hinxton)ENSG00000117834 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117834 [Gene_View]  chr1:48222685-48248644 [Contig_View]  SLC5A9 [Vega]
ICGC DataPortalENSG00000117834
TCGA cBioPortalSLC5A9
AceView (NCBI)SLC5A9
Genatlas (Paris)SLC5A9
WikiGenes200010
SOURCE (Princeton)SLC5A9
Genetics Home Reference (NIH)SLC5A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC5A9  -     chr1:48222685-48248644 +  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC5A9  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblSLC5A9 - 1p33 [CytoView hg19]  SLC5A9 - 1p33 [CytoView hg38]
Mapping of homologs : NCBISLC5A9 [Mapview hg19]  SLC5A9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI767388 AK131200 AK296133 AK311580 BC025411
RefSeq transcript (Entrez)NM_001011547 NM_001135181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC5A9
Cluster EST : UnigeneHs.37890 [ NCBI ]
CGAP (NCI)Hs.37890
Alternative Splicing GalleryENSG00000117834
Gene ExpressionSLC5A9 [ NCBI-GEO ]   SLC5A9 [ EBI - ARRAY_EXPRESS ]   SLC5A9 [ SEEK ]   SLC5A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC5A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200010
GTEX Portal (Tissue expression)SLC5A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M3M2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M3M2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M3M2
Splice isoforms : SwissVarQ2M3M2
PhosPhoSitePlusQ2M3M2
Domaine pattern : Prosite (Expaxy)NA_SOLUT_SYMP_1 (PS00456)    NA_SOLUT_SYMP_3 (PS50283)   
Domains : Interpro (EBI)Na/solute_symporter    Na/solute_symporter_CS   
Domain families : Pfam (Sanger)SSF (PF00474)   
Domain families : Pfam (NCBI)pfam00474   
Conserved Domain (NCBI)SLC5A9
DMDM Disease mutations200010
Blocks (Seattle)SLC5A9
SuperfamilyQ2M3M2
Human Protein AtlasENSG00000117834
Peptide AtlasQ2M3M2
HPRD18060
IPIIPI00299501   IPI00927063   IPI00784512   IPI00913999   IPI00926297   IPI00984006   IPI00984641   
Protein Interaction databases
DIP (DOE-UCLA)Q2M3M2
IntAct (EBI)Q2M3M2
FunCoupENSG00000117834
BioGRIDSLC5A9
STRING (EMBL)SLC5A9
ZODIACSLC5A9
Ontologies - Pathways
QuickGOQ2M3M2
Ontology : AmiGOlow-affinity glucose:sodium symporter activity  glucose:sodium symporter activity  plasma membrane  integral component of plasma membrane  sodium ion transport  extracellular exosome  glucose transmembrane transport  
Ontology : EGO-EBIlow-affinity glucose:sodium symporter activity  glucose:sodium symporter activity  plasma membrane  integral component of plasma membrane  sodium ion transport  extracellular exosome  glucose transmembrane transport  
NDEx NetworkSLC5A9
Atlas of Cancer Signalling NetworkSLC5A9
Wikipedia pathwaysSLC5A9
Orthology - Evolution
OrthoDB200010
GeneTree (enSembl)ENSG00000117834
Phylogenetic Trees/Animal Genes : TreeFamSLC5A9
HOVERGENQ2M3M2
HOGENOMQ2M3M2
Homologs : HomoloGeneSLC5A9
Homology/Alignments : Family Browser (UCSC)SLC5A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC5A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC5A9
dbVarSLC5A9
ClinVarSLC5A9
1000_GenomesSLC5A9 
Exome Variant ServerSLC5A9
ExAC (Exome Aggregation Consortium)SLC5A9 (select the gene name)
Genetic variants : HAPMAP200010
Genomic Variants (DGV)SLC5A9 [DGVbeta]
DECIPHERSLC5A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC5A9 
Mutations
ICGC Data PortalSLC5A9 
TCGA Data PortalSLC5A9 
Broad Tumor PortalSLC5A9
OASIS PortalSLC5A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC5A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC5A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC5A9
DgiDB (Drug Gene Interaction Database)SLC5A9
DoCM (Curated mutations)SLC5A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC5A9 (select a term)
intoGenSLC5A9
Cancer3DSLC5A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC5A9
Genetic Testing Registry SLC5A9
NextProtQ2M3M2 [Medical]
TSGene200010
GENETestsSLC5A9
Target ValidationSLC5A9
Huge Navigator SLC5A9 [HugePedia]
snp3D : Map Gene to Disease200010
BioCentury BCIQSLC5A9
ClinGenSLC5A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200010
Chemical/Pharm GKB GenePA134949681
Clinical trialSLC5A9
Miscellaneous
canSAR (ICR)SLC5A9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC5A9
EVEXSLC5A9
GoPubMedSLC5A9
iHOPSLC5A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:16 CEST 2017

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