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SLC66A2 (solute carrier family 66 member 2)

Identity

Alias_namesPQLC1
PQ loop repeat containing 1
Alias_symbol (synonym)FLJ22378
Other alias
HGNC (Hugo) SLC66A2
LocusID (NCBI) 80148
Atlas_Id 58023
Location 18q23  [Link to chromosome band 18q23]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SLC66A2   26188
Cards
Entrez_Gene (NCBI)SLC66A2  80148  solute carrier family 66 member 2
AliasesPQLC1
GeneCards (Weizmann)SLC66A2
Ensembl hg19 (Hinxton)ENSG00000122490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122490 [Gene_View]  ENSG00000122490 [Sequence]  - [Contig_View]  SLC66A2 [Vega]
ICGC DataPortalENSG00000122490
TCGA cBioPortalSLC66A2
AceView (NCBI)SLC66A2
Genatlas (Paris)SLC66A2
WikiGenes80148
SOURCE (Princeton)SLC66A2
Genetics Home Reference (NIH)SLC66A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC66A2  -  
GoldenPath hg19 (UCSC)SLC66A2  -  
GoldenPathSLC66A2 - [CytoView hg19]  SLC66A2 - [CytoView hg38]
ImmunoBaseENSG00000122490
Mapping of homologs : NCBISLC66A2 [Mapview hg19]  SLC66A2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026031 AK123870 AK126188 AK301881 AK303818
RefSeq transcript (Entrez)NM_001146343 NM_001146345 NM_025078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC66A2
Cluster EST : UnigeneHs.288284 [ NCBI ]
CGAP (NCI)Hs.288284
Alternative Splicing GalleryENSG00000122490
Gene ExpressionSLC66A2 [ NCBI-GEO ]   SLC66A2 [ EBI - ARRAY_EXPRESS ]   SLC66A2 [ SEEK ]   SLC66A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC66A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80148
GTEX Portal (Tissue expression)SLC66A2
Human Protein AtlasENSG00000122490-SLC66A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2U9
Splice isoforms : SwissVarQ8N2U9
PhosPhoSitePlusQ8N2U9
Domains : Interpro (EBI)PQ-loop_rpt   
Domain families : Pfam (Sanger)PQ-loop (PF04193)   
Domain families : Pfam (NCBI)pfam04193   
Domain families : Smart (EMBL)CTNS (SM00679)  
Conserved Domain (NCBI)SLC66A2
DMDM Disease mutations80148
Blocks (Seattle)SLC66A2
SuperfamilyQ8N2U9
Human Protein Atlas [tissue]ENSG00000122490-SLC66A2 [tissue]
Peptide AtlasQ8N2U9
IPIIPI00181586   IPI00642804   IPI00018001   IPI00917992   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2U9
IntAct (EBI)Q8N2U9
FunCoupENSG00000122490
BioGRIDSLC66A2
STRING (EMBL)SLC66A2
ZODIACSLC66A2
Ontologies - Pathways
QuickGOQ8N2U9
Ontology : AmiGOendosome  trans-Golgi network  cytosol  integral component of membrane  retrograde transport, endosome to Golgi  phospholipid translocation  
Ontology : EGO-EBIendosome  trans-Golgi network  cytosol  integral component of membrane  retrograde transport, endosome to Golgi  phospholipid translocation  
NDEx NetworkSLC66A2
Atlas of Cancer Signalling NetworkSLC66A2
Wikipedia pathwaysSLC66A2
Orthology - Evolution
OrthoDB80148
GeneTree (enSembl)ENSG00000122490
Phylogenetic Trees/Animal Genes : TreeFamSLC66A2
HOGENOMQ8N2U9
Homologs : HomoloGeneSLC66A2
Homology/Alignments : Family Browser (UCSC)SLC66A2
Gene fusions - Rearrangements
Fusion : QuiverSLC66A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC66A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC66A2
dbVarSLC66A2
ClinVarSLC66A2
1000_GenomesSLC66A2 
Exome Variant ServerSLC66A2
ExAC (Exome Aggregation Consortium)ENSG00000122490
GNOMAD BrowserENSG00000122490
Varsome BrowserSLC66A2
Genetic variants : HAPMAP80148
Genomic Variants (DGV)SLC66A2 [DGVbeta]
DECIPHERSLC66A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC66A2 
Mutations
ICGC Data PortalSLC66A2 
TCGA Data PortalSLC66A2 
Broad Tumor PortalSLC66A2
OASIS PortalSLC66A2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC66A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC66A2
DgiDB (Drug Gene Interaction Database)SLC66A2
DoCM (Curated mutations)SLC66A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC66A2 (select a term)
intoGenSLC66A2
Cancer3DSLC66A2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC66A2
MedgenSLC66A2
Genetic Testing Registry SLC66A2
NextProtQ8N2U9 [Medical]
TSGene80148
GENETestsSLC66A2
Target ValidationSLC66A2
Huge Navigator SLC66A2 [HugePedia]
snp3D : Map Gene to Disease80148
BioCentury BCIQSLC66A2
ClinGenSLC66A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80148
Chemical/Pharm GKB GenePA134958806
Clinical trialSLC66A2
Miscellaneous
canSAR (ICR)SLC66A2 (select the gene name)
DataMed IndexSLC66A2
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC66A2
EVEXSLC66A2
GoPubMedSLC66A2
iHOPSLC66A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:29:24 CEST 2019

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