Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC6A1-AS1 (SLC6A1 antisense RNA 1)

Identity

Alias_namesSLC6A1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SLC6A1-AS1
LocusID (NCBI) 100874090
Atlas_Id 73475
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 11006098 and ends at 11019224 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC6A1-AS1   40546
Cards
Entrez_Gene (NCBI)SLC6A1-AS1  100874090  SLC6A1 antisense RNA 1
Aliases
GeneCards (Weizmann)SLC6A1-AS1
Ensembl hg19 (Hinxton)ENSG00000232287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232287 [Gene_View]  chr3:11006098-11019224 [Contig_View]  SLC6A1-AS1 [Vega]
ICGC DataPortalENSG00000232287
TCGA cBioPortalSLC6A1-AS1
AceView (NCBI)SLC6A1-AS1
Genatlas (Paris)SLC6A1-AS1
WikiGenes100874090
SOURCE (Princeton)SLC6A1-AS1
Genetics Home Reference (NIH)SLC6A1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A1-AS1  -     chr3:11006098-11019224 -  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A1-AS1  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblSLC6A1-AS1 - 3p25.3 [CytoView hg19]  SLC6A1-AS1 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBISLC6A1-AS1 [Mapview hg19]  SLC6A1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA771774
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A1-AS1
Cluster EST : UnigeneHs.628542 [ NCBI ]
CGAP (NCI)Hs.628542
Alternative Splicing GalleryENSG00000232287
Gene ExpressionSLC6A1-AS1 [ NCBI-GEO ]   SLC6A1-AS1 [ EBI - ARRAY_EXPRESS ]   SLC6A1-AS1 [ SEEK ]   SLC6A1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874090
GTEX Portal (Tissue expression)SLC6A1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC6A1-AS1
DMDM Disease mutations100874090
Blocks (Seattle)SLC6A1-AS1
Human Protein AtlasENSG00000232287
Protein Interaction databases
FunCoupENSG00000232287
BioGRIDSLC6A1-AS1
STRING (EMBL)SLC6A1-AS1
ZODIACSLC6A1-AS1
Ontologies - Pathways
Huge Navigator SLC6A1-AS1 [HugePedia]
snp3D : Map Gene to Disease100874090
BioCentury BCIQSLC6A1-AS1
ClinGenSLC6A1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874090
Clinical trialSLC6A1-AS1
Miscellaneous
canSAR (ICR)SLC6A1-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC6A1-AS1
EVEXSLC6A1-AS1
GoPubMedSLC6A1-AS1
iHOPSLC6A1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:26 CEST 2017

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