Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC6A10P (solute carrier family 6 member 10, pseudogene)

Identity

Alias_namesSLC6A10
solute carrier family 6 (neurotransmitter transporter, creatine), member 10
solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene
Alias_symbol (synonym)CT-2
Other aliasCT2
SLC6A10pA
HGNC (Hugo) SLC6A10P
LocusID (NCBI) 386757
Atlas_Id 73467
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 32877476 and ends at 32885142 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC6A10P   11043
Cards
Entrez_Gene (NCBI)SLC6A10P  386757  solute carrier family 6 member 10, pseudogene
AliasesCT-2; CT2; SLC6A10; SLC6A10pA
GeneCards (Weizmann)SLC6A10P
Ensembl hg19 (Hinxton)ENSG00000214617 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214617 [Gene_View]  ENSG00000214617 [Sequence]  chr16:32877476-32885142 [Contig_View]  SLC6A10P [Vega]
ICGC DataPortalENSG00000214617
TCGA cBioPortalSLC6A10P
AceView (NCBI)SLC6A10P
Genatlas (Paris)SLC6A10P
WikiGenes386757
SOURCE (Princeton)SLC6A10P
Genetics Home Reference (NIH)SLC6A10P
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A10P  -     chr16:32877476-32885142 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A10P  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblSLC6A10P - 16p11.2 [CytoView hg19]  SLC6A10P - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBISLC6A10P [Mapview hg19]  SLC6A10P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125843 BC117243
RefSeq transcript (Entrez)NM_198857
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A10P
Cluster EST : UnigeneHs.433146 [ NCBI ]
CGAP (NCI)Hs.433146
Alternative Splicing GalleryENSG00000214617
Gene ExpressionSLC6A10P [ NCBI-GEO ]   SLC6A10P [ EBI - ARRAY_EXPRESS ]   SLC6A10P [ SEEK ]   SLC6A10P [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A10P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)386757
GTEX Portal (Tissue expression)SLC6A10P
Human Protein AtlasENSG00000214617-SLC6A10P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC6A10P
DMDM Disease mutations386757
Blocks (Seattle)SLC6A10P
Human Protein Atlas [tissue]ENSG00000214617-SLC6A10P [tissue]
HPRD13479
IPIIPI00874188   IPI00867647   
Protein Interaction databases
FunCoupENSG00000214617
BioGRIDSLC6A10P
STRING (EMBL)SLC6A10P
ZODIACSLC6A10P
Ontologies - Pathways
Huge Navigator SLC6A10P [HugePedia]
snp3D : Map Gene to Disease386757
BioCentury BCIQSLC6A10P
ClinGenSLC6A10P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386757
Chemical/Pharm GKB GenePA35906
Clinical trialSLC6A10P
Miscellaneous
canSAR (ICR)SLC6A10P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC6A10P
EVEXSLC6A10P
GoPubMedSLC6A10P
iHOPSLC6A10P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:29:37 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.