Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC6A14 (solute carrier family 6 member 14)

Identity

Alias_namessolute carrier family 6 (neurotransmitter transporter), member 14
solute carrier family 6 (amino acid transporter), member 14
Other aliasBMIQ11
HGNC (Hugo) SLC6A14
LocusID (NCBI) 11254
Atlas_Id 43632
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 116436579 and ends at 116461458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ERP29 (12q24.13) / SLC6A14 (Xq23)SLC6A14 (Xq23) / SLC6A14 (Xq23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC6A14   11047
Cards
Entrez_Gene (NCBI)SLC6A14  11254  solute carrier family 6 member 14
AliasesBMIQ11
GeneCards (Weizmann)SLC6A14
Ensembl hg19 (Hinxton)ENSG00000268104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268104 [Gene_View]  ENSG00000268104 [Sequence]  chrX:116436579-116461458 [Contig_View]  SLC6A14 [Vega]
ICGC DataPortalENSG00000268104
TCGA cBioPortalSLC6A14
AceView (NCBI)SLC6A14
Genatlas (Paris)SLC6A14
WikiGenes11254
SOURCE (Princeton)SLC6A14
Genetics Home Reference (NIH)SLC6A14
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A14  -     chrX:116436579-116461458 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A14  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblSLC6A14 - 12p13.33 [CytoView hg19]  SLC6A14 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBISLC6A14 [Mapview hg19]  SLC6A14 [Mapview hg38]
OMIM300306   300444   
Gene and transcription
Genbank (Entrez)AF151978 AK304243 AK313390 BC093710 BC093712
RefSeq transcript (Entrez)NM_007231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A14
Cluster EST : UnigeneHs.522109 [ NCBI ]
CGAP (NCI)Hs.522109
Alternative Splicing GalleryENSG00000268104
Gene ExpressionSLC6A14 [ NCBI-GEO ]   SLC6A14 [ EBI - ARRAY_EXPRESS ]   SLC6A14 [ SEEK ]   SLC6A14 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11254
GTEX Portal (Tissue expression)SLC6A14
Human Protein AtlasENSG00000268104-SLC6A14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN76
Splice isoforms : SwissVarQ9UN76
PhosPhoSitePlusQ9UN76
Domaine pattern : Prosite (Expaxy)NA_NEUROTRAN_SYMP_1 (PS00610)    NA_NEUROTRAN_SYMP_2 (PS00754)    NA_NEUROTRAN_SYMP_3 (PS50267)   
Domains : Interpro (EBI)Na/ntran_symport    SNS_sf   
Domain families : Pfam (Sanger)SNF (PF00209)   
Domain families : Pfam (NCBI)pfam00209   
Conserved Domain (NCBI)SLC6A14
DMDM Disease mutations11254
Blocks (Seattle)SLC6A14
SuperfamilyQ9UN76
Human Protein Atlas [tissue]ENSG00000268104-SLC6A14 [tissue]
Peptide AtlasQ9UN76
HPRD02344
IPIIPI00027011   IPI00910677   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN76
IntAct (EBI)Q9UN76
FunCoupENSG00000268104
BioGRIDSLC6A14
STRING (EMBL)SLC6A14
ZODIACSLC6A14
Ontologies - Pathways
QuickGOQ9UN76
Ontology : AmiGOamino acid transmembrane transport  transporter activity  neurotransmitter:sodium symporter activity  plasma membrane  plasma membrane  cellular amino acid metabolic process  neurotransmitter transport  amino acid transport  response to toxic substance  amino acid transmembrane transporter activity  integral component of membrane  brush border membrane  vesicle  sodium ion transmembrane transport  extracellular exosome  
Ontology : EGO-EBIamino acid transmembrane transport  transporter activity  neurotransmitter:sodium symporter activity  plasma membrane  plasma membrane  cellular amino acid metabolic process  neurotransmitter transport  amino acid transport  response to toxic substance  amino acid transmembrane transporter activity  integral component of membrane  brush border membrane  vesicle  sodium ion transmembrane transport  extracellular exosome  
NDEx NetworkSLC6A14
Atlas of Cancer Signalling NetworkSLC6A14
Wikipedia pathwaysSLC6A14
Orthology - Evolution
OrthoDB11254
GeneTree (enSembl)ENSG00000268104
Phylogenetic Trees/Animal Genes : TreeFamSLC6A14
HOVERGENQ9UN76
HOGENOMQ9UN76
Homologs : HomoloGeneSLC6A14
Homology/Alignments : Family Browser (UCSC)SLC6A14
Gene fusions - Rearrangements
Fusion : QuiverSLC6A14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC6A14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC6A14
dbVarSLC6A14
ClinVarSLC6A14
1000_GenomesSLC6A14 
Exome Variant ServerSLC6A14
ExAC (Exome Aggregation Consortium)ENSG00000268104
GNOMAD BrowserENSG00000268104
Varsome BrowserSLC6A14
Genetic variants : HAPMAP11254
Genomic Variants (DGV)SLC6A14 [DGVbeta]
DECIPHERSLC6A14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC6A14 
Mutations
ICGC Data PortalSLC6A14 
TCGA Data PortalSLC6A14 
Broad Tumor PortalSLC6A14
OASIS PortalSLC6A14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC6A14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC6A14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SLC6A14
DgiDB (Drug Gene Interaction Database)SLC6A14
DoCM (Curated mutations)SLC6A14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC6A14 (select a term)
intoGenSLC6A14
Cancer3DSLC6A14(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300306    300444   
Orphanet
DisGeNETSLC6A14
MedgenSLC6A14
Genetic Testing Registry SLC6A14
NextProtQ9UN76 [Medical]
TSGene11254
GENETestsSLC6A14
Target ValidationSLC6A14
Huge Navigator SLC6A14 [HugePedia]
snp3D : Map Gene to Disease11254
BioCentury BCIQSLC6A14
ClinGenSLC6A14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11254
Chemical/Pharm GKB GenePA35910
Clinical trialSLC6A14
Miscellaneous
canSAR (ICR)SLC6A14 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC6A14
EVEXSLC6A14
GoPubMedSLC6A14
iHOPSLC6A14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Aug 16 11:32:46 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.