Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC6A14 (solute carrier family 6 member 14)

Identity

Alias (NCBI)BMIQ11
HGNC (Hugo) SLC6A14
HGNC Previous namesolute carrier family 6 (neurotransmitter transporter), member 14
 solute carrier family 6 (amino acid transporter), member 14
LocusID (NCBI) 11254
Atlas_Id 43632
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 116436606 and ends at 116461458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ERP29 (12q24.13) / SLC6A14 (Xq23)SLC6A14 (Xq23) / SLC6A14 (Xq23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC6A14   11047
Cards
Entrez_Gene (NCBI)SLC6A14    solute carrier family 6 member 14
AliasesBMIQ11
GeneCards (Weizmann)SLC6A14
Ensembl hg19 (Hinxton)ENSG00000268104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268104 [Gene_View]  ENSG00000268104 [Sequence]  chrX:116436606-116461458 [Contig_View]  SLC6A14 [Vega]
ICGC DataPortalENSG00000268104
TCGA cBioPortalSLC6A14
AceView (NCBI)SLC6A14
Genatlas (Paris)SLC6A14
SOURCE (Princeton)SLC6A14
Genetics Home Reference (NIH)SLC6A14
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A14  -     chrX:116436606-116461458 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A14  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathSLC6A14 - Xq23 [CytoView hg19]  SLC6A14 - Xq23 [CytoView hg38]
ImmunoBaseENSG00000268104
genome Data Viewer NCBISLC6A14 [Mapview hg19]  
OMIM300444   
Gene and transcription
Genbank (Entrez)AF151978 AK304243 AK313390 BC093710 BC093712
RefSeq transcript (Entrez)NM_007231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A14
Alternative Splicing GalleryENSG00000268104
Gene ExpressionSLC6A14 [ NCBI-GEO ]   SLC6A14 [ EBI - ARRAY_EXPRESS ]   SLC6A14 [ SEEK ]   SLC6A14 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A14 [ Firebrowse - Broad ]
GenevisibleExpression of SLC6A14 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11254
GTEX Portal (Tissue expression)SLC6A14
Human Protein AtlasENSG00000268104-SLC6A14 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN76
Splice isoforms : SwissVarQ9UN76
PhosPhoSitePlusQ9UN76
Domaine pattern : Prosite (Expaxy)NA_NEUROTRAN_SYMP_1 (PS00610)    NA_NEUROTRAN_SYMP_2 (PS00754)    NA_NEUROTRAN_SYMP_3 (PS50267)   
Domains : Interpro (EBI)Na/ntran_symport    SNS_sf   
Domain families : Pfam (Sanger)SNF (PF00209)   
Domain families : Pfam (NCBI)pfam00209   
Conserved Domain (NCBI)SLC6A14
Blocks (Seattle)SLC6A14
SuperfamilyQ9UN76
Human Protein Atlas [tissue]ENSG00000268104-SLC6A14 [tissue]
Peptide AtlasQ9UN76
HPRD02344
IPIIPI00027011   IPI00910677   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN76
IntAct (EBI)Q9UN76
BioGRIDSLC6A14
STRING (EMBL)SLC6A14
ZODIACSLC6A14
Ontologies - Pathways
QuickGOQ9UN76
Ontology : AmiGOamino acid transmembrane transport  neurotransmitter:sodium symporter activity  plasma membrane  plasma membrane  transport  neurotransmitter transport  amino acid transport  response to toxic substance  amino acid transmembrane transporter activity  integral component of membrane  vesicle  extracellular exosome  
Ontology : EGO-EBIamino acid transmembrane transport  neurotransmitter:sodium symporter activity  plasma membrane  plasma membrane  transport  neurotransmitter transport  amino acid transport  response to toxic substance  amino acid transmembrane transporter activity  integral component of membrane  vesicle  extracellular exosome  
NDEx NetworkSLC6A14
Atlas of Cancer Signalling NetworkSLC6A14
Wikipedia pathwaysSLC6A14
Orthology - Evolution
OrthoDB11254
GeneTree (enSembl)ENSG00000268104
Phylogenetic Trees/Animal Genes : TreeFamSLC6A14
HOGENOMQ9UN76
Homologs : HomoloGeneSLC6A14
Homology/Alignments : Family Browser (UCSC)SLC6A14
Gene fusions - Rearrangements
Fusion : QuiverSLC6A14
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC6A14 [hg38]
dbVarSLC6A14
ClinVarSLC6A14
MonarchSLC6A14
1000_GenomesSLC6A14 
Exome Variant ServerSLC6A14
GNOMAD BrowserENSG00000268104
Varsome BrowserSLC6A14
Genomic Variants (DGV)SLC6A14 [DGVbeta]
DECIPHERSLC6A14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC6A14 
Mutations
ICGC Data PortalSLC6A14 
TCGA Data PortalSLC6A14 
Broad Tumor PortalSLC6A14
OASIS PortalSLC6A14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC6A14  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC6A14
Mutations and Diseases : HGMDSLC6A14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SLC6A14
DgiDB (Drug Gene Interaction Database)SLC6A14
DoCM (Curated mutations)SLC6A14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC6A14 (select a term)
intoGenSLC6A14
Cancer3DSLC6A14(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300444   
Orphanet
DisGeNETSLC6A14
MedgenSLC6A14
Genetic Testing Registry SLC6A14
NextProtQ9UN76 [Medical]
GENETestsSLC6A14
Target ValidationSLC6A14
Huge Navigator SLC6A14 [HugePedia]
ClinGenSLC6A14
Clinical trials, drugs, therapy
MyCancerGenomeSLC6A14
Protein Interactions : CTD
Pharm GKB GenePA35910
PharosQ9UN76
Clinical trialSLC6A14
Miscellaneous
canSAR (ICR)SLC6A14 (select the gene name)
HarmonizomeSLC6A14
DataMed IndexSLC6A14
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC6A14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:38:04 CET 2021
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