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SLC6A15 (solute carrier family 6 member 15)

Identity

Alias_namessolute carrier family 6 (neurotransmitter transporter), member 15
solute carrier family 6 (neutral amino acid transporter), member 15
Alias_symbol (synonym)hv7-3
NTT73
FLJ10316
V7-3
SBAT1
Other alias
HGNC (Hugo) SLC6A15
LocusID (NCBI) 55117
Atlas_Id 73471
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 84859488 and ends at 84912829 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PPM1H (12q14.1) / SLC6A15 (12q21.31)SLC6A15 (12q21.31) / NR1D1 (17q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC6A15   13621
Cards
Entrez_Gene (NCBI)SLC6A15  55117  solute carrier family 6 member 15
AliasesNTT73; SBAT1; V7-3; hv7-3
GeneCards (Weizmann)SLC6A15
Ensembl hg19 (Hinxton)ENSG00000072041 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000072041 [Gene_View]  chr12:84859488-84912829 [Contig_View]  SLC6A15 [Vega]
ICGC DataPortalENSG00000072041
TCGA cBioPortalSLC6A15
AceView (NCBI)SLC6A15
Genatlas (Paris)SLC6A15
WikiGenes55117
SOURCE (Princeton)SLC6A15
Genetics Home Reference (NIH)SLC6A15
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A15  -     chr12:84859488-84912829 -  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A15  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblSLC6A15 - 12q21.31 [CytoView hg19]  SLC6A15 - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBISLC6A15 [Mapview hg19]  SLC6A15 [Mapview hg38]
OMIM607971   
Gene and transcription
Genbank (Entrez)AF265577 AF351619 AI368909 AK001178 AK022853
RefSeq transcript (Entrez)NM_001146335 NM_018057 NM_182767
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A15
Cluster EST : UnigeneHs.680104 [ NCBI ]
CGAP (NCI)Hs.680104
Alternative Splicing GalleryENSG00000072041
Gene ExpressionSLC6A15 [ NCBI-GEO ]   SLC6A15 [ EBI - ARRAY_EXPRESS ]   SLC6A15 [ SEEK ]   SLC6A15 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55117
GTEX Portal (Tissue expression)SLC6A15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2J7
Splice isoforms : SwissVarQ9H2J7
PhosPhoSitePlusQ9H2J7
Domaine pattern : Prosite (Expaxy)NA_NEUROTRAN_SYMP_1 (PS00610)    NA_NEUROTRAN_SYMP_2 (PS00754)    NA_NEUROTRAN_SYMP_3 (PS50267)   
Domains : Interpro (EBI)Na/ntran_symport    Na/ntran_symport_orphan   
Domain families : Pfam (Sanger)SNF (PF00209)   
Domain families : Pfam (NCBI)pfam00209   
Conserved Domain (NCBI)SLC6A15
DMDM Disease mutations55117
Blocks (Seattle)SLC6A15
SuperfamilyQ9H2J7
Human Protein AtlasENSG00000072041
Peptide AtlasQ9H2J7
HPRD12141
IPIIPI00018071   IPI00160573   IPI01013878   IPI01021903   IPI01022867   IPI01023039   IPI01022581   IPI01022726   IPI01020824   IPI00746124   IPI00165147   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2J7
IntAct (EBI)Q9H2J7
FunCoupENSG00000072041
BioGRIDSLC6A15
STRING (EMBL)SLC6A15
ZODIACSLC6A15
Ontologies - Pathways
QuickGOQ9H2J7
Ontology : AmiGOproline:sodium symporter activity  neurotransmitter transporter activity  neurotransmitter:sodium symporter activity  plasma membrane  integral component of plasma membrane  sodium ion transport  neurotransmitter transport  amino acid transport  amino acid transmembrane transporter activity  neutral amino acid transport  leucine transport  leucine transport  proline transport  integral component of membrane  proline transmembrane transport  
Ontology : EGO-EBIproline:sodium symporter activity  neurotransmitter transporter activity  neurotransmitter:sodium symporter activity  plasma membrane  integral component of plasma membrane  sodium ion transport  neurotransmitter transport  amino acid transport  amino acid transmembrane transporter activity  neutral amino acid transport  leucine transport  leucine transport  proline transport  integral component of membrane  proline transmembrane transport  
NDEx NetworkSLC6A15
Atlas of Cancer Signalling NetworkSLC6A15
Wikipedia pathwaysSLC6A15
Orthology - Evolution
OrthoDB55117
GeneTree (enSembl)ENSG00000072041
Phylogenetic Trees/Animal Genes : TreeFamSLC6A15
HOVERGENQ9H2J7
HOGENOMQ9H2J7
Homologs : HomoloGeneSLC6A15
Homology/Alignments : Family Browser (UCSC)SLC6A15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC6A15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC6A15
dbVarSLC6A15
ClinVarSLC6A15
1000_GenomesSLC6A15 
Exome Variant ServerSLC6A15
ExAC (Exome Aggregation Consortium)SLC6A15 (select the gene name)
Genetic variants : HAPMAP55117
Genomic Variants (DGV)SLC6A15 [DGVbeta]
DECIPHERSLC6A15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC6A15 
Mutations
ICGC Data PortalSLC6A15 
TCGA Data PortalSLC6A15 
Broad Tumor PortalSLC6A15
OASIS PortalSLC6A15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC6A15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC6A15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC6A15
DgiDB (Drug Gene Interaction Database)SLC6A15
DoCM (Curated mutations)SLC6A15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC6A15 (select a term)
intoGenSLC6A15
Cancer3DSLC6A15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607971   
Orphanet
MedgenSLC6A15
Genetic Testing Registry SLC6A15
NextProtQ9H2J7 [Medical]
TSGene55117
GENETestsSLC6A15
Target ValidationSLC6A15
Huge Navigator SLC6A15 [HugePedia]
snp3D : Map Gene to Disease55117
BioCentury BCIQSLC6A15
ClinGenSLC6A15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55117
Chemical/Pharm GKB GenePA37799
Clinical trialSLC6A15
Miscellaneous
canSAR (ICR)SLC6A15 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC6A15
EVEXSLC6A15
GoPubMedSLC6A15
iHOPSLC6A15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:25 CEST 2017

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