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SLC6A16 (solute carrier family 6 member 16)

Identity

Alias_namessolute carrier family 6 (neurotransmitter transporter), member 16
solute carrier family 6, member 16
Alias_symbol (synonym)NTT5
Other aliasNT5
HGNC (Hugo) SLC6A16
LocusID (NCBI) 28968
Atlas_Id 73472
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49289635 and ends at 49325217 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC6A16   13622
Cards
Entrez_Gene (NCBI)SLC6A16  28968  solute carrier family 6 member 16
AliasesNT5; NTT5
GeneCards (Weizmann)SLC6A16
Ensembl hg19 (Hinxton)ENSG00000063127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000063127 [Gene_View]  chr19:49289635-49325217 [Contig_View]  SLC6A16 [Vega]
ICGC DataPortalENSG00000063127
TCGA cBioPortalSLC6A16
AceView (NCBI)SLC6A16
Genatlas (Paris)SLC6A16
WikiGenes28968
SOURCE (Princeton)SLC6A16
Genetics Home Reference (NIH)SLC6A16
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A16  -     chr19:49289635-49325217 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A16  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblSLC6A16 - 19q13.33 [CytoView hg19]  SLC6A16 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBISLC6A16 [Mapview hg19]  SLC6A16 [Mapview hg38]
OMIM607972   
Gene and transcription
Genbank (Entrez)AF151977 AF265578 AL136856 AW451672 BC034948
RefSeq transcript (Entrez)NM_014037
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A16
Cluster EST : UnigeneHs.130949 [ NCBI ]
CGAP (NCI)Hs.130949
Alternative Splicing GalleryENSG00000063127
Gene ExpressionSLC6A16 [ NCBI-GEO ]   SLC6A16 [ EBI - ARRAY_EXPRESS ]   SLC6A16 [ SEEK ]   SLC6A16 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28968
GTEX Portal (Tissue expression)SLC6A16
Human Protein AtlasENSG00000063127-SLC6A16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZN6
Splice isoforms : SwissVarQ9GZN6
PhosPhoSitePlusQ9GZN6
Domaine pattern : Prosite (Expaxy)NA_NEUROTRAN_SYMP_1 (PS00610)    NA_NEUROTRAN_SYMP_2 (PS00754)    NA_NEUROTRAN_SYMP_3 (PS50267)   
Domains : Interpro (EBI)Na/ntran_symport   
Domain families : Pfam (Sanger)SNF (PF00209)   
Domain families : Pfam (NCBI)pfam00209   
Conserved Domain (NCBI)SLC6A16
DMDM Disease mutations28968
Blocks (Seattle)SLC6A16
SuperfamilyQ9GZN6
Human Protein Atlas [tissue]ENSG00000063127-SLC6A16 [tissue]
Peptide AtlasQ9GZN6
IPIIPI00022304   IPI00646184   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZN6
IntAct (EBI)Q9GZN6
FunCoupENSG00000063127
BioGRIDSLC6A16
STRING (EMBL)SLC6A16
ZODIACSLC6A16
Ontologies - Pathways
QuickGOQ9GZN6
Ontology : AmiGOamino acid transmembrane transport  neurotransmitter transporter activity  neurotransmitter:sodium symporter activity  intracellular  integral component of plasma membrane  neurotransmitter transport  amino acid transmembrane transporter activity  
Ontology : EGO-EBIamino acid transmembrane transport  neurotransmitter transporter activity  neurotransmitter:sodium symporter activity  intracellular  integral component of plasma membrane  neurotransmitter transport  amino acid transmembrane transporter activity  
NDEx NetworkSLC6A16
Atlas of Cancer Signalling NetworkSLC6A16
Wikipedia pathwaysSLC6A16
Orthology - Evolution
OrthoDB28968
GeneTree (enSembl)ENSG00000063127
Phylogenetic Trees/Animal Genes : TreeFamSLC6A16
HOVERGENQ9GZN6
HOGENOMQ9GZN6
Homologs : HomoloGeneSLC6A16
Homology/Alignments : Family Browser (UCSC)SLC6A16
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC6A16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC6A16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC6A16
dbVarSLC6A16
ClinVarSLC6A16
1000_GenomesSLC6A16 
Exome Variant ServerSLC6A16
ExAC (Exome Aggregation Consortium)ENSG00000063127
GNOMAD BrowserENSG00000063127
Genetic variants : HAPMAP28968
Genomic Variants (DGV)SLC6A16 [DGVbeta]
DECIPHERSLC6A16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC6A16 
Mutations
ICGC Data PortalSLC6A16 
TCGA Data PortalSLC6A16 
Broad Tumor PortalSLC6A16
OASIS PortalSLC6A16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC6A16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC6A16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC6A16
DgiDB (Drug Gene Interaction Database)SLC6A16
DoCM (Curated mutations)SLC6A16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC6A16 (select a term)
intoGenSLC6A16
Cancer3DSLC6A16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607972   
Orphanet
MedgenSLC6A16
Genetic Testing Registry SLC6A16
NextProtQ9GZN6 [Medical]
TSGene28968
GENETestsSLC6A16
Target ValidationSLC6A16
Huge Navigator SLC6A16 [HugePedia]
snp3D : Map Gene to Disease28968
BioCentury BCIQSLC6A16
ClinGenSLC6A16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28968
Chemical/Pharm GKB GenePA37800
Clinical trialSLC6A16
Miscellaneous
canSAR (ICR)SLC6A16 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC6A16
EVEXSLC6A16
GoPubMedSLC6A16
iHOPSLC6A16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:46 CET 2017

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