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SLC6A18 (solute carrier family 6 member 18)

Identity

Alias_namessolute carrier family 6 (neurotransmitter transporter), member 18
solute carrier family 6, member 18
solute carrier family 6 (neutral amino acid transporter), member 18
Alias_symbol (synonym)FLJ31236
Xtrp2
Other alias
HGNC (Hugo) SLC6A18
LocusID (NCBI) 348932
Atlas_Id 73474
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 1225355 and ends at 1246189 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC6A18   26441
Cards
Entrez_Gene (NCBI)SLC6A18  348932  solute carrier family 6 member 18
AliasesXtrp2
GeneCards (Weizmann)SLC6A18
Ensembl hg19 (Hinxton)ENSG00000164363 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164363 [Gene_View]  chr5:1225355-1246189 [Contig_View]  SLC6A18 [Vega]
ICGC DataPortalENSG00000164363
TCGA cBioPortalSLC6A18
AceView (NCBI)SLC6A18
Genatlas (Paris)SLC6A18
WikiGenes348932
SOURCE (Princeton)SLC6A18
Genetics Home Reference (NIH)SLC6A18
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A18  -     chr5:1225355-1246189 +  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A18  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblSLC6A18 - 5p15.33 [CytoView hg19]  SLC6A18 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBISLC6A18 [Mapview hg19]  SLC6A18 [Mapview hg38]
OMIM610300   
Gene and transcription
Genbank (Entrez)AK055798 AK298257 BC056757
RefSeq transcript (Entrez)NM_182632
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A18
Cluster EST : UnigeneHs.213284 [ NCBI ]
CGAP (NCI)Hs.213284
Alternative Splicing GalleryENSG00000164363
Gene ExpressionSLC6A18 [ NCBI-GEO ]   SLC6A18 [ EBI - ARRAY_EXPRESS ]   SLC6A18 [ SEEK ]   SLC6A18 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348932
GTEX Portal (Tissue expression)SLC6A18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N87   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N87  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N87
Splice isoforms : SwissVarQ96N87
PhosPhoSitePlusQ96N87
Domaine pattern : Prosite (Expaxy)NA_NEUROTRAN_SYMP_1 (PS00610)    NA_NEUROTRAN_SYMP_2 (PS00754)    NA_NEUROTRAN_SYMP_3 (PS50267)   
Domains : Interpro (EBI)Na/ntran_symport    Na/ntran_symport_orphan   
Domain families : Pfam (Sanger)SNF (PF00209)   
Domain families : Pfam (NCBI)pfam00209   
Conserved Domain (NCBI)SLC6A18
DMDM Disease mutations348932
Blocks (Seattle)SLC6A18
SuperfamilyQ96N87
Human Protein AtlasENSG00000164363
Peptide AtlasQ96N87
HPRD15396
IPIIPI00289095   IPI00001286   
Protein Interaction databases
DIP (DOE-UCLA)Q96N87
IntAct (EBI)Q96N87
FunCoupENSG00000164363
BioGRIDSLC6A18
STRING (EMBL)SLC6A18
ZODIACSLC6A18
Ontologies - Pathways
QuickGOQ96N87
Ontology : AmiGOamino acid transmembrane transport  transporter activity  neurotransmitter:sodium symporter activity  plasma membrane  integral component of plasma membrane  transport  neurotransmitter transport  amino acid transport  amino acid transmembrane transporter activity  brush border membrane  
Ontology : EGO-EBIamino acid transmembrane transport  transporter activity  neurotransmitter:sodium symporter activity  plasma membrane  integral component of plasma membrane  transport  neurotransmitter transport  amino acid transport  amino acid transmembrane transporter activity  brush border membrane  
NDEx NetworkSLC6A18
Atlas of Cancer Signalling NetworkSLC6A18
Wikipedia pathwaysSLC6A18
Orthology - Evolution
OrthoDB348932
GeneTree (enSembl)ENSG00000164363
Phylogenetic Trees/Animal Genes : TreeFamSLC6A18
HOVERGENQ96N87
HOGENOMQ96N87
Homologs : HomoloGeneSLC6A18
Homology/Alignments : Family Browser (UCSC)SLC6A18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC6A18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC6A18
dbVarSLC6A18
ClinVarSLC6A18
1000_GenomesSLC6A18 
Exome Variant ServerSLC6A18
ExAC (Exome Aggregation Consortium)SLC6A18 (select the gene name)
Genetic variants : HAPMAP348932
Genomic Variants (DGV)SLC6A18 [DGVbeta]
DECIPHERSLC6A18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC6A18 
Mutations
ICGC Data PortalSLC6A18 
TCGA Data PortalSLC6A18 
Broad Tumor PortalSLC6A18
OASIS PortalSLC6A18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC6A18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC6A18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC6A18
DgiDB (Drug Gene Interaction Database)SLC6A18
DoCM (Curated mutations)SLC6A18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC6A18 (select a term)
intoGenSLC6A18
Cancer3DSLC6A18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610300   
Orphanet10466   
MedgenSLC6A18
Genetic Testing Registry SLC6A18
NextProtQ96N87 [Medical]
TSGene348932
GENETestsSLC6A18
Target ValidationSLC6A18
Huge Navigator SLC6A18 [HugePedia]
snp3D : Map Gene to Disease348932
BioCentury BCIQSLC6A18
ClinGenSLC6A18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348932
Chemical/Pharm GKB GenePA134982449
Clinical trialSLC6A18
Miscellaneous
canSAR (ICR)SLC6A18 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC6A18
EVEXSLC6A18
GoPubMedSLC6A18
iHOPSLC6A18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:17 CEST 2017

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