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SLC6A6 (solute carrier family 6 member 6)

Identity

Alias_namessolute carrier family 6 (neurotransmitter transporter, taurine), member 6
solute carrier family 6 (neurotransmitter transporter), member 6
Alias_symbol (synonym)TAUT
Other alias
HGNC (Hugo) SLC6A6
LocusID (NCBI) 6533
Atlas_Id 50889
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 14402576 and ends at 14489349 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC6A6 (3p25.1) / GSDMB (17q12)SLC6A6 (3p25.1) / SLC6A6 (3p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC6A6   11052
Cards
Entrez_Gene (NCBI)SLC6A6  6533  solute carrier family 6 member 6
AliasesTAUT
GeneCards (Weizmann)SLC6A6
Ensembl hg19 (Hinxton)ENSG00000131389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131389 [Gene_View]  chr3:14402576-14489349 [Contig_View]  SLC6A6 [Vega]
ICGC DataPortalENSG00000131389
TCGA cBioPortalSLC6A6
AceView (NCBI)SLC6A6
Genatlas (Paris)SLC6A6
WikiGenes6533
SOURCE (Princeton)SLC6A6
Genetics Home Reference (NIH)SLC6A6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A6  -     chr3:14402576-14489349 +  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A6  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblSLC6A6 - 3p25.1 [CytoView hg19]  SLC6A6 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBISLC6A6 [Mapview hg19]  SLC6A6 [Mapview hg38]
OMIM186854   
Gene and transcription
Genbank (Entrez)AB209172 AF346763 AK303649 AK307284 AK308417
RefSeq transcript (Entrez)NM_001134367 NM_001134368 NM_003043
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A6
Cluster EST : UnigeneHs.529488 [ NCBI ]
CGAP (NCI)Hs.529488
Alternative Splicing GalleryENSG00000131389
Gene ExpressionSLC6A6 [ NCBI-GEO ]   SLC6A6 [ EBI - ARRAY_EXPRESS ]   SLC6A6 [ SEEK ]   SLC6A6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6533
GTEX Portal (Tissue expression)SLC6A6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31641   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31641  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31641
Splice isoforms : SwissVarP31641
PhosPhoSitePlusP31641
Domaine pattern : Prosite (Expaxy)NA_NEUROTRAN_SYMP_1 (PS00610)    NA_NEUROTRAN_SYMP_2 (PS00754)    NA_NEUROTRAN_SYMP_3 (PS50267)   
Domains : Interpro (EBI)Na/ntran_symport    Na/ntran_symport_taurine   
Domain families : Pfam (Sanger)SNF (PF00209)   
Domain families : Pfam (NCBI)pfam00209   
Conserved Domain (NCBI)SLC6A6
DMDM Disease mutations6533
Blocks (Seattle)SLC6A6
SuperfamilyP31641
Human Protein AtlasENSG00000131389
Peptide AtlasP31641
HPRD01734
IPIIPI00783565   IPI00925370   IPI00748744   IPI00926448   IPI00927202   IPI00927395   
Protein Interaction databases
DIP (DOE-UCLA)P31641
IntAct (EBI)P31641
FunCoupENSG00000131389
BioGRIDSLC6A6
STRING (EMBL)SLC6A6
ZODIACSLC6A6
Ontologies - Pathways
QuickGOP31641
Ontology : AmiGOamino acid transmembrane transport  neurotransmitter:sodium symporter activity  taurine:sodium symporter activity  plasma membrane  integral component of plasma membrane  cellular amino acid metabolic process  transport  neurotransmitter transport  amino acid transport  amino acid transmembrane transporter activity  taurine transport  integral component of membrane  
Ontology : EGO-EBIamino acid transmembrane transport  neurotransmitter:sodium symporter activity  taurine:sodium symporter activity  plasma membrane  integral component of plasma membrane  cellular amino acid metabolic process  transport  neurotransmitter transport  amino acid transport  amino acid transmembrane transporter activity  taurine transport  integral component of membrane  
NDEx NetworkSLC6A6
Atlas of Cancer Signalling NetworkSLC6A6
Wikipedia pathwaysSLC6A6
Orthology - Evolution
OrthoDB6533
GeneTree (enSembl)ENSG00000131389
Phylogenetic Trees/Animal Genes : TreeFamSLC6A6
HOVERGENP31641
HOGENOMP31641
Homologs : HomoloGeneSLC6A6
Homology/Alignments : Family Browser (UCSC)SLC6A6
Gene fusions - Rearrangements
Fusion Cancer (Beijing)SLC6A6 [3p25.1]  -  GSDMB [17q12]  [FUSC003749]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC6A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC6A6
dbVarSLC6A6
ClinVarSLC6A6
1000_GenomesSLC6A6 
Exome Variant ServerSLC6A6
ExAC (Exome Aggregation Consortium)SLC6A6 (select the gene name)
Genetic variants : HAPMAP6533
Genomic Variants (DGV)SLC6A6 [DGVbeta]
DECIPHERSLC6A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC6A6 
Mutations
ICGC Data PortalSLC6A6 
TCGA Data PortalSLC6A6 
Broad Tumor PortalSLC6A6
OASIS PortalSLC6A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC6A6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC6A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC6A6
DgiDB (Drug Gene Interaction Database)SLC6A6
DoCM (Curated mutations)SLC6A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC6A6 (select a term)
intoGenSLC6A6
Cancer3DSLC6A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186854   
Orphanet
MedgenSLC6A6
Genetic Testing Registry SLC6A6
NextProtP31641 [Medical]
TSGene6533
GENETestsSLC6A6
Huge Navigator SLC6A6 [HugePedia]
snp3D : Map Gene to Disease6533
BioCentury BCIQSLC6A6
ClinGenSLC6A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6533
Chemical/Pharm GKB GenePA35912
Clinical trialSLC6A6
Miscellaneous
canSAR (ICR)SLC6A6 (select the gene name)
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC6A6
EVEXSLC6A6
GoPubMedSLC6A6
iHOPSLC6A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:37:56 CEST 2017

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