Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC6A7 (solute carrier family 6 member 7)

Identity

Alias_namessolute carrier family 6 (neurotransmitter transporter, L-proline), member 7
solute carrier family 6 (neurotransmitter transporter), member 7
Alias_symbol (synonym)PROT
Other alias
HGNC (Hugo) SLC6A7
LocusID (NCBI) 6534
Atlas_Id 73478
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 150189861 and ends at 150211072 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC6A7   11054
Cards
Entrez_Gene (NCBI)SLC6A7  6534  solute carrier family 6 member 7
AliasesPROT
GeneCards (Weizmann)SLC6A7
Ensembl hg19 (Hinxton)ENSG00000011083 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000011083 [Gene_View]  chr5:150189861-150211072 [Contig_View]  SLC6A7 [Vega]
ICGC DataPortalENSG00000011083
TCGA cBioPortalSLC6A7
AceView (NCBI)SLC6A7
Genatlas (Paris)SLC6A7
WikiGenes6534
SOURCE (Princeton)SLC6A7
Genetics Home Reference (NIH)SLC6A7
Genomic and cartography
GoldenPath hg38 (UCSC)SLC6A7  -     chr5:150189861-150211072 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC6A7  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblSLC6A7 - 5q32 [CytoView hg19]  SLC6A7 - 5q32 [CytoView hg38]
Mapping of homologs : NCBISLC6A7 [Mapview hg19]  SLC6A7 [Mapview hg38]
OMIM606205   
Gene and transcription
Genbank (Entrez)AK096607 AK308895 AK312309 BC069631 BC093785
RefSeq transcript (Entrez)NM_014228
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC6A7
Cluster EST : UnigeneHs.241597 [ NCBI ]
CGAP (NCI)Hs.241597
Alternative Splicing GalleryENSG00000011083
Gene ExpressionSLC6A7 [ NCBI-GEO ]   SLC6A7 [ EBI - ARRAY_EXPRESS ]   SLC6A7 [ SEEK ]   SLC6A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC6A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6534
GTEX Portal (Tissue expression)SLC6A7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99884   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99884  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99884
Splice isoforms : SwissVarQ99884
PhosPhoSitePlusQ99884
Domaine pattern : Prosite (Expaxy)NA_NEUROTRAN_SYMP_1 (PS00610)    NA_NEUROTRAN_SYMP_2 (PS00754)    NA_NEUROTRAN_SYMP_3 (PS50267)   
Domains : Interpro (EBI)Na/ntran_symport   
Domain families : Pfam (Sanger)SNF (PF00209)   
Domain families : Pfam (NCBI)pfam00209   
Conserved Domain (NCBI)SLC6A7
DMDM Disease mutations6534
Blocks (Seattle)SLC6A7
SuperfamilyQ99884
Human Protein AtlasENSG00000011083
Peptide AtlasQ99884
HPRD09371
IPIIPI00018537   IPI00979788   
Protein Interaction databases
DIP (DOE-UCLA)Q99884
IntAct (EBI)Q99884
FunCoupENSG00000011083
BioGRIDSLC6A7
STRING (EMBL)SLC6A7
ZODIACSLC6A7
Ontologies - Pathways
QuickGOQ99884
Ontology : AmiGOproline:sodium symporter activity  neurotransmitter:sodium symporter activity  plasma membrane  integral component of plasma membrane  transport  neurotransmitter transport  L-proline transmembrane transporter activity  proline transport  membrane  proline transmembrane transport  
Ontology : EGO-EBIproline:sodium symporter activity  neurotransmitter:sodium symporter activity  plasma membrane  integral component of plasma membrane  transport  neurotransmitter transport  L-proline transmembrane transporter activity  proline transport  membrane  proline transmembrane transport  
NDEx NetworkSLC6A7
Atlas of Cancer Signalling NetworkSLC6A7
Wikipedia pathwaysSLC6A7
Orthology - Evolution
OrthoDB6534
GeneTree (enSembl)ENSG00000011083
Phylogenetic Trees/Animal Genes : TreeFamSLC6A7
HOVERGENQ99884
HOGENOMQ99884
Homologs : HomoloGeneSLC6A7
Homology/Alignments : Family Browser (UCSC)SLC6A7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC6A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC6A7
dbVarSLC6A7
ClinVarSLC6A7
1000_GenomesSLC6A7 
Exome Variant ServerSLC6A7
ExAC (Exome Aggregation Consortium)SLC6A7 (select the gene name)
Genetic variants : HAPMAP6534
Genomic Variants (DGV)SLC6A7 [DGVbeta]
DECIPHERSLC6A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC6A7 
Mutations
ICGC Data PortalSLC6A7 
TCGA Data PortalSLC6A7 
Broad Tumor PortalSLC6A7
OASIS PortalSLC6A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC6A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC6A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC6A7
DgiDB (Drug Gene Interaction Database)SLC6A7
DoCM (Curated mutations)SLC6A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC6A7 (select a term)
intoGenSLC6A7
Cancer3DSLC6A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606205   
Orphanet
MedgenSLC6A7
Genetic Testing Registry SLC6A7
NextProtQ99884 [Medical]
TSGene6534
GENETestsSLC6A7
Target ValidationSLC6A7
Huge Navigator SLC6A7 [HugePedia]
snp3D : Map Gene to Disease6534
BioCentury BCIQSLC6A7
ClinGenSLC6A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6534
Chemical/Pharm GKB GenePA35914
Clinical trialSLC6A7
Miscellaneous
canSAR (ICR)SLC6A7 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC6A7
EVEXSLC6A7
GoPubMedSLC6A7
iHOPSLC6A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:18 CEST 2017

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