Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC7A10 (solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10)

Identity

Alias_namessolute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10
Alias_symbol (synonym)asc-1
Other aliasASC1
HASC-1
HGNC (Hugo) SLC7A10
LocusID (NCBI) 56301
Atlas_Id 73481
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 33699570 and ends at 33716756 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC7A10   11058
Cards
Entrez_Gene (NCBI)SLC7A10  56301  solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10
AliasesASC1; HASC-1; asc-1
GeneCards (Weizmann)SLC7A10
Ensembl hg19 (Hinxton)ENSG00000130876 [Gene_View]  chr19:33699570-33716756 [Contig_View]  SLC7A10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130876 [Gene_View]  chr19:33699570-33716756 [Contig_View]  SLC7A10 [Vega]
ICGC DataPortalENSG00000130876
TCGA cBioPortalSLC7A10
AceView (NCBI)SLC7A10
Genatlas (Paris)SLC7A10
WikiGenes56301
SOURCE (Princeton)SLC7A10
Genetics Home Reference (NIH)SLC7A10
Genomic and cartography
GoldenPath hg19 (UCSC)SLC7A10  -     chr19:33699570-33716756 -  19q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC7A10  -     19q13.11   [Description]    (hg38-Dec_2013)
EnsemblSLC7A10 - 19q13.11 [CytoView hg19]  SLC7A10 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBISLC7A10 [Mapview hg19]  SLC7A10 [Mapview hg38]
OMIM607959   
Gene and transcription
Genbank (Entrez)AB037670 AJ277731 AK000846 AK307527 AK316594
RefSeq transcript (Entrez)NM_019849
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SLC7A10
Cluster EST : UnigeneHs.58679 [ NCBI ]
CGAP (NCI)Hs.58679
Alternative Splicing GalleryENSG00000130876
Gene ExpressionSLC7A10 [ NCBI-GEO ]   SLC7A10 [ EBI - ARRAY_EXPRESS ]   SLC7A10 [ SEEK ]   SLC7A10 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC7A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56301
GTEX Portal (Tissue expression)SLC7A10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS82
Splice isoforms : SwissVarQ9NS82
PhosPhoSitePlusQ9NS82
Domains : Interpro (EBI)AA/rel_permease1   
Domain families : Pfam (Sanger)AA_permease_2 (PF13520)   
Domain families : Pfam (NCBI)pfam13520   
Conserved Domain (NCBI)SLC7A10
DMDM Disease mutations56301
Blocks (Seattle)SLC7A10
SuperfamilyQ9NS82
Human Protein AtlasENSG00000130876
Peptide AtlasQ9NS82
HPRD12137
IPIIPI00164782   IPI00644241   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS82
IntAct (EBI)Q9NS82
FunCoupENSG00000130876
BioGRIDSLC7A10
STRING (EMBL)SLC7A10
ZODIACSLC7A10
Ontologies - Pathways
QuickGOQ9NS82
Ontology : AmiGOamino acid transmembrane transport  plasma membrane  integral component of plasma membrane  ion transport  amino acid transport  blood coagulation  neutral amino acid transmembrane transporter activity  L-serine transmembrane transporter activity  neutral amino acid transport  L-serine transport  membrane  D-alanine transport  D-serine transport  leukocyte migration  transmembrane transport  
Ontology : EGO-EBIamino acid transmembrane transport  plasma membrane  integral component of plasma membrane  ion transport  amino acid transport  blood coagulation  neutral amino acid transmembrane transporter activity  L-serine transmembrane transporter activity  neutral amino acid transport  L-serine transport  membrane  D-alanine transport  D-serine transport  leukocyte migration  transmembrane transport  
NDEx NetworkSLC7A10
Atlas of Cancer Signalling NetworkSLC7A10
Wikipedia pathwaysSLC7A10
Orthology - Evolution
OrthoDB56301
GeneTree (enSembl)ENSG00000130876
Phylogenetic Trees/Animal Genes : TreeFamSLC7A10
HOVERGENQ9NS82
HOGENOMQ9NS82
Homologs : HomoloGeneSLC7A10
Homology/Alignments : Family Browser (UCSC)SLC7A10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC7A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC7A10
dbVarSLC7A10
ClinVarSLC7A10
1000_GenomesSLC7A10 
Exome Variant ServerSLC7A10
ExAC (Exome Aggregation Consortium)SLC7A10 (select the gene name)
Genetic variants : HAPMAP56301
Genomic Variants (DGV)SLC7A10 [DGVbeta]
DECIPHER (Syndromes)19:33699570-33716756  ENSG00000130876
CONAN: Copy Number AnalysisSLC7A10 
Mutations
ICGC Data PortalSLC7A10 
TCGA Data PortalSLC7A10 
Broad Tumor PortalSLC7A10
OASIS PortalSLC7A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC7A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC7A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC7A10
DgiDB (Drug Gene Interaction Database)SLC7A10
DoCM (Curated mutations)SLC7A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC7A10 (select a term)
intoGenSLC7A10
Cancer3DSLC7A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607959   
Orphanet
MedgenSLC7A10
Genetic Testing Registry SLC7A10
NextProtQ9NS82 [Medical]
TSGene56301
GENETestsSLC7A10
Huge Navigator SLC7A10 [HugePedia]
snp3D : Map Gene to Disease56301
BioCentury BCIQSLC7A10
ClinGenSLC7A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56301
Chemical/Pharm GKB GenePA35918
Clinical trialSLC7A10
Miscellaneous
canSAR (ICR)SLC7A10 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC7A10
EVEXSLC7A10
GoPubMedSLC7A10
iHOPSLC7A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:55 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.