Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC7A3 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 3)

Identity

Alias_namessolute carrier family 7 (cationic amino acid transporter, y+ system), member 3
Alias_symbol (synonym)CAT-3
ATRC3
FLJ14541
Other aliasCAT3
HGNC (Hugo) SLC7A3
LocusID (NCBI) 84889
Atlas_Id 73485
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 70145430 and ends at 70150975 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC7A3   11061
Cards
Entrez_Gene (NCBI)SLC7A3  84889  solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
AliasesATRC3; CAT-3; CAT3
GeneCards (Weizmann)SLC7A3
Ensembl hg19 (Hinxton)ENSG00000165349 [Gene_View]  chrX:70145430-70150975 [Contig_View]  SLC7A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165349 [Gene_View]  chrX:70145430-70150975 [Contig_View]  SLC7A3 [Vega]
ICGC DataPortalENSG00000165349
TCGA cBioPortalSLC7A3
AceView (NCBI)SLC7A3
Genatlas (Paris)SLC7A3
WikiGenes84889
SOURCE (Princeton)SLC7A3
Genetics Home Reference (NIH)SLC7A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC7A3  -     chrX:70145430-70150975 -  Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC7A3  -     Xq13.1   [Description]    (hg38-Dec_2013)
EnsemblSLC7A3 - Xq13.1 [CytoView hg19]  SLC7A3 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBISLC7A3 [Mapview hg19]  SLC7A3 [Mapview hg38]
OMIM300443   
Gene and transcription
Genbank (Entrez)AF320612 AK027447 AK074865 AK075014 BC033816
RefSeq transcript (Entrez)NM_001048164 NM_032803
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021370 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)SLC7A3
Cluster EST : UnigeneHs.175220 [ NCBI ]
CGAP (NCI)Hs.175220
Alternative Splicing GalleryENSG00000165349
Gene ExpressionSLC7A3 [ NCBI-GEO ]   SLC7A3 [ EBI - ARRAY_EXPRESS ]   SLC7A3 [ SEEK ]   SLC7A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC7A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84889
GTEX Portal (Tissue expression)SLC7A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WY07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WY07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WY07
Splice isoforms : SwissVarQ8WY07
PhosPhoSitePlusQ8WY07
Domains : Interpro (EBI)AA/rel_permease1    CAT3    Cat_AA_permease    CAT_C   
Domain families : Pfam (Sanger)AA_permease_2 (PF13520)    AA_permease_C (PF13906)   
Domain families : Pfam (NCBI)pfam13520    pfam13906   
Conserved Domain (NCBI)SLC7A3
DMDM Disease mutations84889
Blocks (Seattle)SLC7A3
SuperfamilyQ8WY07
Human Protein AtlasENSG00000165349
Peptide AtlasQ8WY07
HPRD02343
IPIIPI00295698   
Protein Interaction databases
DIP (DOE-UCLA)Q8WY07
IntAct (EBI)Q8WY07
FunCoupENSG00000165349
BioGRIDSLC7A3
STRING (EMBL)SLC7A3
ZODIACSLC7A3
Ontologies - Pathways
QuickGOQ8WY07
Ontology : AmiGOL-ornithine transmembrane transporter activity  plasma membrane  integral component of plasma membrane  ion transport  amino acid transport  arginine transmembrane transporter activity  L-lysine transmembrane transporter activity  antiporter activity  transmembrane transport  L-arginine import across plasma membrane  L-ornithine transmembrane transport  L-lysine transmembrane transport  
Ontology : EGO-EBIL-ornithine transmembrane transporter activity  plasma membrane  integral component of plasma membrane  ion transport  amino acid transport  arginine transmembrane transporter activity  L-lysine transmembrane transporter activity  antiporter activity  transmembrane transport  L-arginine import across plasma membrane  L-ornithine transmembrane transport  L-lysine transmembrane transport  
NDEx NetworkSLC7A3
Atlas of Cancer Signalling NetworkSLC7A3
Wikipedia pathwaysSLC7A3
Orthology - Evolution
OrthoDB84889
GeneTree (enSembl)ENSG00000165349
Phylogenetic Trees/Animal Genes : TreeFamSLC7A3
HOVERGENQ8WY07
HOGENOMQ8WY07
Homologs : HomoloGeneSLC7A3
Homology/Alignments : Family Browser (UCSC)SLC7A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC7A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC7A3
dbVarSLC7A3
ClinVarSLC7A3
1000_GenomesSLC7A3 
Exome Variant ServerSLC7A3
ExAC (Exome Aggregation Consortium)SLC7A3 (select the gene name)
Genetic variants : HAPMAP84889
Genomic Variants (DGV)SLC7A3 [DGVbeta]
DECIPHER (Syndromes)X:70145430-70150975  ENSG00000165349
CONAN: Copy Number AnalysisSLC7A3 
Mutations
ICGC Data PortalSLC7A3 
TCGA Data PortalSLC7A3 
Broad Tumor PortalSLC7A3
OASIS PortalSLC7A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC7A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC7A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SLC7A3
DgiDB (Drug Gene Interaction Database)SLC7A3
DoCM (Curated mutations)SLC7A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC7A3 (select a term)
intoGenSLC7A3
Cancer3DSLC7A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300443   
Orphanet
MedgenSLC7A3
Genetic Testing Registry SLC7A3
NextProtQ8WY07 [Medical]
TSGene84889
GENETestsSLC7A3
Huge Navigator SLC7A3 [HugePedia]
snp3D : Map Gene to Disease84889
BioCentury BCIQSLC7A3
ClinGenSLC7A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84889
Chemical/Pharm GKB GenePA35921
Clinical trialSLC7A3
Miscellaneous
canSAR (ICR)SLC7A3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC7A3
EVEXSLC7A3
GoPubMedSLC7A3
iHOPSLC7A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:55 CET 2017

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