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SLC7A5P1 (solute carrier family 7 member 5 pseudogene 1)

Identity

Alias_namessolute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1
Alias_symbol (synonym)LAT1-3TM
MLAS
Other aliasDC49
hLAT1-3TM
HGNC (Hugo) SLC7A5P1
LocusID (NCBI) 81893
Atlas_Id 78077
Location 16p11.2  [Link to chromosome band 16p11]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SLC7A5P1   29458
Cards
Entrez_Gene (NCBI)SLC7A5P1  81893  solute carrier family 7 member 5 pseudogene 1
AliasesDC49; LAT1-3TM; MLAS; hLAT1-3TM
GeneCards (Weizmann)SLC7A5P1
Ensembl hg19 (Hinxton)ENSG00000260727 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260727 [Gene_View]  - [Contig_View]  SLC7A5P1 [Vega]
ICGC DataPortalENSG00000260727
TCGA cBioPortalSLC7A5P1
AceView (NCBI)SLC7A5P1
Genatlas (Paris)SLC7A5P1
WikiGenes81893
SOURCE (Princeton)SLC7A5P1
Genetics Home Reference (NIH)SLC7A5P1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC7A5P1  -  
GoldenPath hg19 (UCSC)SLC7A5P1  -  
EnsemblSLC7A5P1 - [CytoView hg19]  SLC7A5P1 - [CytoView hg38]
Mapping of homologs : NCBISLC7A5P1 [Mapview hg19]  SLC7A5P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_031211
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC7A5P1
Cluster EST : UnigeneHs.677169 [ NCBI ]
CGAP (NCI)Hs.677169
Alternative Splicing GalleryENSG00000260727
Gene ExpressionSLC7A5P1 [ NCBI-GEO ]   SLC7A5P1 [ EBI - ARRAY_EXPRESS ]   SLC7A5P1 [ SEEK ]   SLC7A5P1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC7A5P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81893
GTEX Portal (Tissue expression)SLC7A5P1
Human Protein AtlasENSG00000260727-SLC7A5P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8MH63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8MH63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8MH63
Splice isoforms : SwissVarQ8MH63
PhosPhoSitePlusQ8MH63
Domains : Interpro (EBI)AA/rel_permease1   
Domain families : Pfam (Sanger)AA_permease_2 (PF13520)   
Domain families : Pfam (NCBI)pfam13520   
Conserved Domain (NCBI)SLC7A5P1
DMDM Disease mutations81893
Blocks (Seattle)SLC7A5P1
SuperfamilyQ8MH63
Human Protein Atlas [tissue]ENSG00000260727-SLC7A5P1 [tissue]
Peptide AtlasQ8MH63
HPRD13964
Protein Interaction databases
DIP (DOE-UCLA)Q8MH63
IntAct (EBI)Q8MH63
FunCoupENSG00000260727
BioGRIDSLC7A5P1
STRING (EMBL)SLC7A5P1
ZODIACSLC7A5P1
Ontologies - Pathways
QuickGOQ8MH63
Ontology : AmiGOintegral component of plasma membrane  neutral amino acid transmembrane transporter activity  L-amino acid transmembrane transporter activity  antiporter activity  neutral amino acid transport  L-alpha-amino acid transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  neutral amino acid transmembrane transporter activity  L-amino acid transmembrane transporter activity  antiporter activity  neutral amino acid transport  L-alpha-amino acid transmembrane transport  
NDEx NetworkSLC7A5P1
Atlas of Cancer Signalling NetworkSLC7A5P1
Wikipedia pathwaysSLC7A5P1
Orthology - Evolution
OrthoDB81893
GeneTree (enSembl)ENSG00000260727
Phylogenetic Trees/Animal Genes : TreeFamSLC7A5P1
HOVERGENQ8MH63
HOGENOMQ8MH63
Homologs : HomoloGeneSLC7A5P1
Homology/Alignments : Family Browser (UCSC)SLC7A5P1
Gene fusions - Rearrangements
Tumor Fusion PortalSLC7A5P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC7A5P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC7A5P1
dbVarSLC7A5P1
ClinVarSLC7A5P1
1000_GenomesSLC7A5P1 
Exome Variant ServerSLC7A5P1
ExAC (Exome Aggregation Consortium)ENSG00000260727
GNOMAD BrowserENSG00000260727
Genetic variants : HAPMAP81893
Genomic Variants (DGV)SLC7A5P1 [DGVbeta]
DECIPHERSLC7A5P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC7A5P1 
Mutations
ICGC Data PortalSLC7A5P1 
TCGA Data PortalSLC7A5P1 
Broad Tumor PortalSLC7A5P1
OASIS PortalSLC7A5P1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC7A5P1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC7A5P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC7A5P1
DgiDB (Drug Gene Interaction Database)SLC7A5P1
DoCM (Curated mutations)SLC7A5P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC7A5P1 (select a term)
intoGenSLC7A5P1
Cancer3DSLC7A5P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC7A5P1
MedgenSLC7A5P1
Genetic Testing Registry SLC7A5P1
NextProtQ8MH63 [Medical]
TSGene81893
GENETestsSLC7A5P1
Target ValidationSLC7A5P1
Huge Navigator SLC7A5P1 [HugePedia]
snp3D : Map Gene to Disease81893
BioCentury BCIQSLC7A5P1
ClinGenSLC7A5P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81893
Clinical trialSLC7A5P1
Miscellaneous
canSAR (ICR)SLC7A5P1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC7A5P1
EVEXSLC7A5P1
GoPubMedSLC7A5P1
iHOPSLC7A5P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:19 CET 2017

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