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SLC7A5P2 (solute carrier family 7 member 5 pseudogene 2)

Identity

Alias_namessolute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2
Alias_symbol (synonym)IMAA
hLAT1-3TM
Other aliasMMAA
HGNC (Hugo) SLC7A5P2
LocusID (NCBI) 387254
Atlas_Id 73487
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21517909 and ends at 21520444 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC7A5P2   24951
Cards
Entrez_Gene (NCBI)SLC7A5P2  387254  solute carrier family 7 member 5 pseudogene 2
AliasesIMAA; MMAA
GeneCards (Weizmann)SLC7A5P2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:21517909-21520444 [Contig_View]  SLC7A5P2 [Vega]
TCGA cBioPortalSLC7A5P2
AceView (NCBI)SLC7A5P2
Genatlas (Paris)SLC7A5P2
WikiGenes387254
SOURCE (Princeton)SLC7A5P2
Genetics Home Reference (NIH)SLC7A5P2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC7A5P2  -     chr16:21517909-21520444 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC7A5P2  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblSLC7A5P2 - 16p12.2 [CytoView hg19]  SLC7A5P2 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBISLC7A5P2 [Mapview hg19]  SLC7A5P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC071656 BI758996 BM904244
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC7A5P2
Cluster EST : UnigeneHs.664952 [ NCBI ]
CGAP (NCI)Hs.664952
Gene ExpressionSLC7A5P2 [ NCBI-GEO ]   SLC7A5P2 [ EBI - ARRAY_EXPRESS ]   SLC7A5P2 [ SEEK ]   SLC7A5P2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC7A5P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387254
GTEX Portal (Tissue expression)SLC7A5P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GIP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GIP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GIP4
Splice isoforms : SwissVarQ9GIP4
PhosPhoSitePlusQ9GIP4
Domains : Interpro (EBI)AA/rel_permease1   
Domain families : Pfam (Sanger)AA_permease_2 (PF13520)   
Domain families : Pfam (NCBI)pfam13520   
Conserved Domain (NCBI)SLC7A5P2
DMDM Disease mutations387254
Blocks (Seattle)SLC7A5P2
SuperfamilyQ9GIP4
Peptide AtlasQ9GIP4
HPRD13738
IPIIPI00450984   IPI00973511   
Protein Interaction databases
DIP (DOE-UCLA)Q9GIP4
IntAct (EBI)Q9GIP4
BioGRIDSLC7A5P2
STRING (EMBL)SLC7A5P2
ZODIACSLC7A5P2
Ontologies - Pathways
QuickGOQ9GIP4
Ontology : AmiGOintegral component of plasma membrane  neutral amino acid transmembrane transporter activity  L-amino acid transmembrane transporter activity  antiporter activity  neutral amino acid transport  L-alpha-amino acid transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  neutral amino acid transmembrane transporter activity  L-amino acid transmembrane transporter activity  antiporter activity  neutral amino acid transport  L-alpha-amino acid transmembrane transport  
NDEx NetworkSLC7A5P2
Atlas of Cancer Signalling NetworkSLC7A5P2
Wikipedia pathwaysSLC7A5P2
Orthology - Evolution
OrthoDB387254
Phylogenetic Trees/Animal Genes : TreeFamSLC7A5P2
HOVERGENQ9GIP4
HOGENOMQ9GIP4
Homologs : HomoloGeneSLC7A5P2
Homology/Alignments : Family Browser (UCSC)SLC7A5P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC7A5P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC7A5P2
dbVarSLC7A5P2
ClinVarSLC7A5P2
1000_GenomesSLC7A5P2 
Exome Variant ServerSLC7A5P2
ExAC (Exome Aggregation Consortium)SLC7A5P2 (select the gene name)
Genetic variants : HAPMAP387254
Genomic Variants (DGV)SLC7A5P2 [DGVbeta]
DECIPHERSLC7A5P2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC7A5P2 
Mutations
ICGC Data PortalSLC7A5P2 
TCGA Data PortalSLC7A5P2 
Broad Tumor PortalSLC7A5P2
OASIS PortalSLC7A5P2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC7A5P2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC7A5P2
DgiDB (Drug Gene Interaction Database)SLC7A5P2
DoCM (Curated mutations)SLC7A5P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC7A5P2 (select a term)
intoGenSLC7A5P2
Cancer3DSLC7A5P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC7A5P2
Genetic Testing Registry SLC7A5P2
NextProtQ9GIP4 [Medical]
TSGene387254
GENETestsSLC7A5P2
Target ValidationSLC7A5P2
Huge Navigator SLC7A5P2 [HugePedia]
snp3D : Map Gene to Disease387254
BioCentury BCIQSLC7A5P2
ClinGenSLC7A5P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387254
Clinical trialSLC7A5P2
Miscellaneous
canSAR (ICR)SLC7A5P2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC7A5P2
EVEXSLC7A5P2
GoPubMedSLC7A5P2
iHOPSLC7A5P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:19 CEST 2017

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