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SLC7A6OS (solute carrier family 7 member 6 opposite strand)

Identity

Alias_namessolute carrier family 7, member 6 opposite strand
Alias_symbol (synonym)FLJ13291
Other alias-
HGNC (Hugo) SLC7A6OS
LocusID (NCBI) 84138
Atlas_Id 73488
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 68300615 and ends at 68310965 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC7A6OS (16q22.1) / SLC7A6OS (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Q96CW6
Nomenclature
HGNC (Hugo)SLC7A6OS   25807
Cards
Entrez_Gene (NCBI)SLC7A6OS  84138  solute carrier family 7 member 6 opposite strand
Aliases
GeneCards (Weizmann)SLC7A6OS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:68300615-68310965 [Contig_View]  SLC7A6OS [Vega]
TCGA cBioPortalSLC7A6OS
AceView (NCBI)SLC7A6OS
Genatlas (Paris)SLC7A6OS
WikiGenes84138
SOURCE (Princeton)SLC7A6OS
Genetics Home Reference (NIH)SLC7A6OS
Genomic and cartography
GoldenPath hg38 (UCSC)SLC7A6OS  -     chr16:68300615-68310965 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC7A6OS  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblSLC7A6OS - 16q22.1 [CytoView hg19]  SLC7A6OS - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBISLC7A6OS [Mapview hg19]  SLC7A6OS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023353 AK091674 AK225712 AY078070 BC013778
RefSeq transcript (Entrez)NM_032178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC7A6OS
Cluster EST : UnigeneHs.729520 [ NCBI ]
CGAP (NCI)Hs.729520
Gene ExpressionSLC7A6OS [ NCBI-GEO ]   SLC7A6OS [ EBI - ARRAY_EXPRESS ]   SLC7A6OS [ SEEK ]   SLC7A6OS [ MEM ]
Gene Expression Viewer (FireBrowse)SLC7A6OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84138
GTEX Portal (Tissue expression)SLC7A6OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CW6
Splice isoforms : SwissVarQ96CW6
PhosPhoSitePlusQ96CW6
Domains : Interpro (EBI)TF_Iwr1   
Domain families : Pfam (Sanger)Iwr1 (PF08574)   
Domain families : Pfam (NCBI)pfam08574   
Conserved Domain (NCBI)SLC7A6OS
DMDM Disease mutations84138
Blocks (Seattle)SLC7A6OS
SuperfamilyQ96CW6
Peptide AtlasQ96CW6
HPRD07824
IPIIPI00304198   
Protein Interaction databases
DIP (DOE-UCLA)Q96CW6
IntAct (EBI)Q96CW6
BioGRIDSLC7A6OS
STRING (EMBL)SLC7A6OS
ZODIACSLC7A6OS
Ontologies - Pathways
QuickGOQ96CW6
Ontology : AmiGOhematopoietic progenitor cell differentiation  nucleus  cytoplasm  protein transport  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  nucleus  cytoplasm  protein transport  
NDEx NetworkSLC7A6OS
Atlas of Cancer Signalling NetworkSLC7A6OS
Wikipedia pathwaysSLC7A6OS
Orthology - Evolution
OrthoDB84138
Phylogenetic Trees/Animal Genes : TreeFamSLC7A6OS
HOVERGEN
HOGENOMQ96CW6
Homologs : HomoloGeneSLC7A6OS
Homology/Alignments : Family Browser (UCSC)SLC7A6OS
Gene fusions - Rearrangements
Tumor Fusion PortalSLC7A6OS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC7A6OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC7A6OS
dbVarSLC7A6OS
ClinVarSLC7A6OS
1000_GenomesSLC7A6OS 
Exome Variant ServerSLC7A6OS
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP84138
Genomic Variants (DGV)SLC7A6OS [DGVbeta]
DECIPHERSLC7A6OS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC7A6OS 
Mutations
ICGC Data PortalSLC7A6OS 
TCGA Data PortalSLC7A6OS 
Broad Tumor PortalSLC7A6OS
OASIS PortalSLC7A6OS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC7A6OS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC7A6OS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC7A6OS
DgiDB (Drug Gene Interaction Database)SLC7A6OS
DoCM (Curated mutatinns)/A:SLC7A6OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC7A6OS (select a term)
intoGenSLC7A6OS
Cancer3DSLC7A6OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLC7A6OS
MedgenSLC7A6OS
Genetic Testing Registry SLC7A6OS
NextProtQ96CW6 [Medical]
TSGene84138
GENETestsSLC7A6OS
Target ValidationSLC7A6OS
Huge Navigator SLC7A6OS [HugePedia]
snp3D : Map Gene to Disease84138
BioCentury BCIQSLC7A6OS
ClinGenSLC7A6OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84138
Chemical/Pharm GKB GenePA142670912
Clinical trialSLC7A6OS
Miscellaneous
canSAR (ICR)SLC7A6OS (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC7A6OS
EVEXSLC7A6OS
GoPubMedSLC7A6OS
iHOPSLC7A6OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:19 CET 2017

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