Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC7A9 (solute carrier family 7 member 9)

Identity

Alias_namesCSNU3
solute carrier family 7 (amino acid transporter light chain
Other aliasBAT1
HGNC (Hugo) SLC7A9
LocusID (NCBI) 11136
Atlas_Id 56407
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 32830511 and ends at 32869777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD27 (19q13.11) / SLC7A9 (19q13.11)NUDT19 (19q13.11) / SLC7A9 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC7A9   11067
Cards
Entrez_Gene (NCBI)SLC7A9  11136  solute carrier family 7 member 9
AliasesBAT1; CSNU3
GeneCards (Weizmann)SLC7A9
Ensembl hg19 (Hinxton)ENSG00000021488 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000021488 [Gene_View]  chr19:32830511-32869777 [Contig_View]  SLC7A9 [Vega]
ICGC DataPortalENSG00000021488
TCGA cBioPortalSLC7A9
AceView (NCBI)SLC7A9
Genatlas (Paris)SLC7A9
WikiGenes11136
SOURCE (Princeton)SLC7A9
Genetics Home Reference (NIH)SLC7A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC7A9  -     chr19:32830511-32869777 -  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC7A9  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblSLC7A9 - 19q13.11 [CytoView hg19]  SLC7A9 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBISLC7A9 [Mapview hg19]  SLC7A9 [Mapview hg38]
OMIM220100   604144   
Gene and transcription
Genbank (Entrez)AB033548 AF141289 AJ249199 AK026446 AK223147
RefSeq transcript (Entrez)NM_001126335 NM_001243036 NM_014270
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC7A9
Cluster EST : UnigeneHs.743345 [ NCBI ]
CGAP (NCI)Hs.743345
Alternative Splicing GalleryENSG00000021488
Gene ExpressionSLC7A9 [ NCBI-GEO ]   SLC7A9 [ EBI - ARRAY_EXPRESS ]   SLC7A9 [ SEEK ]   SLC7A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC7A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11136
GTEX Portal (Tissue expression)SLC7A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82251   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82251  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82251
Splice isoforms : SwissVarP82251
PhosPhoSitePlusP82251
Domains : Interpro (EBI)AA/rel_permease1   
Domain families : Pfam (Sanger)AA_permease_2 (PF13520)   
Domain families : Pfam (NCBI)pfam13520   
Conserved Domain (NCBI)SLC7A9
DMDM Disease mutations11136
Blocks (Seattle)SLC7A9
SuperfamilyP82251
Human Protein AtlasENSG00000021488
Peptide AtlasP82251
HPRD04997
IPIIPI00011357   
Protein Interaction databases
DIP (DOE-UCLA)P82251
IntAct (EBI)P82251
FunCoupENSG00000021488
BioGRIDSLC7A9
STRING (EMBL)SLC7A9
ZODIACSLC7A9
Ontologies - Pathways
QuickGOP82251
Ontology : AmiGOamino acid transmembrane transport  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  protein complex assembly  amino acid transport  neutral amino acid transmembrane transporter activity  L-cystine transmembrane transporter activity  antiporter activity  neutral amino acid transport  L-cystine transport  apical plasma membrane  brush border membrane  peptide antigen binding  leukocyte migration  
Ontology : EGO-EBIamino acid transmembrane transport  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  protein complex assembly  amino acid transport  neutral amino acid transmembrane transporter activity  L-cystine transmembrane transporter activity  antiporter activity  neutral amino acid transport  L-cystine transport  apical plasma membrane  brush border membrane  peptide antigen binding  leukocyte migration  
Pathways : KEGGProtein digestion and absorption   
NDEx NetworkSLC7A9
Atlas of Cancer Signalling NetworkSLC7A9
Wikipedia pathwaysSLC7A9
Orthology - Evolution
OrthoDB11136
GeneTree (enSembl)ENSG00000021488
Phylogenetic Trees/Animal Genes : TreeFamSLC7A9
HOVERGENP82251
HOGENOMP82251
Homologs : HomoloGeneSLC7A9
Homology/Alignments : Family Browser (UCSC)SLC7A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC7A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC7A9
dbVarSLC7A9
ClinVarSLC7A9
1000_GenomesSLC7A9 
Exome Variant ServerSLC7A9
ExAC (Exome Aggregation Consortium)SLC7A9 (select the gene name)
Genetic variants : HAPMAP11136
Genomic Variants (DGV)SLC7A9 [DGVbeta]
DECIPHERSLC7A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC7A9 
Mutations
ICGC Data PortalSLC7A9 
TCGA Data PortalSLC7A9 
Broad Tumor PortalSLC7A9
OASIS PortalSLC7A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC7A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC7A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC7A9
DgiDB (Drug Gene Interaction Database)SLC7A9
DoCM (Curated mutations)SLC7A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC7A9 (select a term)
intoGenSLC7A9
Cancer3DSLC7A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM220100    604144   
Orphanet12446   
MedgenSLC7A9
Genetic Testing Registry SLC7A9
NextProtP82251 [Medical]
TSGene11136
GENETestsSLC7A9
Target ValidationSLC7A9
Huge Navigator SLC7A9 [HugePedia]
snp3D : Map Gene to Disease11136
BioCentury BCIQSLC7A9
ClinGenSLC7A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11136
Chemical/Pharm GKB GenePA35927
Clinical trialSLC7A9
Miscellaneous
canSAR (ICR)SLC7A9 (select the gene name)
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC7A9
EVEXSLC7A9
GoPubMedSLC7A9
iHOPSLC7A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:31:52 CEST 2017

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