Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC9A3-AS1 (SLC9A3 antisense RNA 1)

Identity

Alias_symbol (synonym)UC011CLY.2
Other alias
HGNC (Hugo) SLC9A3-AS1
LocusID (NCBI) 100288152
Atlas_Id 79162
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 473236 and ends at 480891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC9A3-AS1   40550
Cards
Entrez_Gene (NCBI)SLC9A3-AS1  100288152  SLC9A3 antisense RNA 1
AliasesUC011CLY.2
GeneCards (Weizmann)SLC9A3-AS1
Ensembl hg19 (Hinxton)ENSG00000225138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225138 [Gene_View]  ENSG00000225138 [Sequence]  chr5:473236-480891 [Contig_View]  SLC9A3-AS1 [Vega]
ICGC DataPortalENSG00000225138
TCGA cBioPortalSLC9A3-AS1
AceView (NCBI)SLC9A3-AS1
Genatlas (Paris)SLC9A3-AS1
WikiGenes100288152
SOURCE (Princeton)SLC9A3-AS1
Genetics Home Reference (NIH)SLC9A3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC9A3-AS1  -     chr5:473236-480891 +  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC9A3-AS1  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblSLC9A3-AS1 - 5p15.33 [CytoView hg19]  SLC9A3-AS1 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBISLC9A3-AS1 [Mapview hg19]  SLC9A3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK296734 AL039305 AL137723 BC013821 BG829609
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC9A3-AS1
Cluster EST : UnigeneHs.535801 [ NCBI ]
CGAP (NCI)Hs.535801
Alternative Splicing GalleryENSG00000225138
Gene ExpressionSLC9A3-AS1 [ NCBI-GEO ]   SLC9A3-AS1 [ EBI - ARRAY_EXPRESS ]   SLC9A3-AS1 [ SEEK ]   SLC9A3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC9A3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100288152
GTEX Portal (Tissue expression)SLC9A3-AS1
Human Protein AtlasENSG00000225138-SLC9A3-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC9A3-AS1
DMDM Disease mutations100288152
Blocks (Seattle)SLC9A3-AS1
Human Protein Atlas [tissue]ENSG00000225138-SLC9A3-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000225138
BioGRIDSLC9A3-AS1
STRING (EMBL)SLC9A3-AS1
ZODIACSLC9A3-AS1
Ontologies - Pathways
Huge Navigator SLC9A3-AS1 [HugePedia]
snp3D : Map Gene to Disease100288152
BioCentury BCIQSLC9A3-AS1
ClinGenSLC9A3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288152
Clinical trialSLC9A3-AS1
Miscellaneous
canSAR (ICR)SLC9A3-AS1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC9A3-AS1
EVEXSLC9A3-AS1
GoPubMedSLC9A3-AS1
iHOPSLC9A3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:29:43 CEST 2018

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