Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC9A7P1 (solute carrier family 9 member 7 pseudogene 1)

Identity

Alias_namessolute carrier family 9 (sodium/hydrogen exchanger), member 7 pseudogene 1
solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1
Other alias-
HGNC (Hugo) SLC9A7P1
LocusID (NCBI) 121456
Atlas_Id 73498
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 98453841 and ends at 98457145 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC9A7P1   32679
Cards
Entrez_Gene (NCBI)SLC9A7P1  121456  solute carrier family 9 member 7 pseudogene 1
Aliases
GeneCards (Weizmann)SLC9A7P1
Ensembl hg19 (Hinxton)ENSG00000227825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227825 [Gene_View]  chr12:98453841-98457145 [Contig_View]  SLC9A7P1 [Vega]
ICGC DataPortalENSG00000227825
TCGA cBioPortalSLC9A7P1
AceView (NCBI)SLC9A7P1
Genatlas (Paris)SLC9A7P1
WikiGenes121456
SOURCE (Princeton)SLC9A7P1
Genetics Home Reference (NIH)SLC9A7P1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC9A7P1  -     chr12:98453841-98457145 -  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC9A7P1  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblSLC9A7P1 - 12q23.1 [CytoView hg19]  SLC9A7P1 - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBISLC9A7P1 [Mapview hg19]  SLC9A7P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092631 AL833235
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC9A7P1
Cluster EST : UnigeneHs.620643 [ NCBI ]
CGAP (NCI)Hs.620643
Alternative Splicing GalleryENSG00000227825
Gene ExpressionSLC9A7P1 [ NCBI-GEO ]   SLC9A7P1 [ EBI - ARRAY_EXPRESS ]   SLC9A7P1 [ SEEK ]   SLC9A7P1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC9A7P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)121456
GTEX Portal (Tissue expression)SLC9A7P1
Human Protein AtlasENSG00000227825-SLC9A7P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC9A7P1
DMDM Disease mutations121456
Blocks (Seattle)SLC9A7P1
Human Protein Atlas [tissue]ENSG00000227825-SLC9A7P1 [tissue]
Protein Interaction databases
FunCoupENSG00000227825
BioGRIDSLC9A7P1
STRING (EMBL)SLC9A7P1
ZODIACSLC9A7P1
Ontologies - Pathways
Huge Navigator SLC9A7P1 [HugePedia]
snp3D : Map Gene to Disease121456
BioCentury BCIQSLC9A7P1
ClinGenSLC9A7P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121456
Clinical trialSLC9A7P1
Miscellaneous
canSAR (ICR)SLC9A7P1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC9A7P1
EVEXSLC9A7P1
GoPubMedSLC9A7P1
iHOPSLC9A7P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:51 CET 2017

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