Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC9A9 (solute carrier family 9 member A9)

Identity

Alias_namessolute carrier family 9 (sodium/hydrogen exchanger), isoform 9
solute carrier family 9 (sodium/hydrogen exchanger), member 9
solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9
Alias_symbol (synonym)FLJ35613
NHE9
Other aliasAUTS16
HGNC (Hugo) SLC9A9
LocusID (NCBI) 285195
Atlas_Id 55706
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 142984064 and ends at 143567373 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATG7 (3p25.3) / SLC9A9 (3q24)MRPS22 (3q23) / SLC9A9 (3q24)SLC9A9 (3q24) / KCNAB1 (3q25.31)
SLC9A9 (3q24) / TNRC6A (16p12.1)SMAD3 (15q22.33) / SLC9A9 (3q24)ZNF608 (5q23.2) / SLC9A9 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC9A9   20653
Cards
Entrez_Gene (NCBI)SLC9A9  285195  solute carrier family 9 member A9
AliasesAUTS16; NHE9
GeneCards (Weizmann)SLC9A9
Ensembl hg19 (Hinxton)ENSG00000181804 [Gene_View]  chr3:142984064-143567373 [Contig_View]  SLC9A9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181804 [Gene_View]  chr3:142984064-143567373 [Contig_View]  SLC9A9 [Vega]
ICGC DataPortalENSG00000181804
TCGA cBioPortalSLC9A9
AceView (NCBI)SLC9A9
Genatlas (Paris)SLC9A9
WikiGenes285195
SOURCE (Princeton)SLC9A9
Genetics Home Reference (NIH)SLC9A9
Genomic and cartography
GoldenPath hg19 (UCSC)SLC9A9  -     chr3:142984064-143567373 -  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC9A9  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblSLC9A9 - 3q24 [CytoView hg19]  SLC9A9 - 3q24 [CytoView hg38]
Mapping of homologs : NCBISLC9A9 [Mapview hg19]  SLC9A9 [Mapview hg38]
OMIM608396   613410   
Gene and transcription
Genbank (Entrez)AB075486 AB089794 AI252807 AK092932 AK301816
RefSeq transcript (Entrez)NM_173653
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_017077 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)SLC9A9
Cluster EST : UnigeneHs.302257 [ NCBI ]
CGAP (NCI)Hs.302257
Alternative Splicing GalleryENSG00000181804
Gene ExpressionSLC9A9 [ NCBI-GEO ]   SLC9A9 [ EBI - ARRAY_EXPRESS ]   SLC9A9 [ SEEK ]   SLC9A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC9A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285195
GTEX Portal (Tissue expression)SLC9A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVB4
Splice isoforms : SwissVarQ8IVB4
PhosPhoSitePlusQ8IVB4
Domains : Interpro (EBI)Cation/H_exchanger    Cation/H_exchanger_CPA1    Na/H_exchanger_6    Na/H_exchanger_9    NaH_exchanger   
Domain families : Pfam (Sanger)Na_H_Exchanger (PF00999)   
Domain families : Pfam (NCBI)pfam00999   
Conserved Domain (NCBI)SLC9A9
DMDM Disease mutations285195
Blocks (Seattle)SLC9A9
SuperfamilyQ8IVB4
Human Protein AtlasENSG00000181804
Peptide AtlasQ8IVB4
HPRD12226
IPIIPI00216972   IPI00910733   IPI00944965   IPI00947444   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVB4
IntAct (EBI)Q8IVB4
FunCoupENSG00000181804
BioGRIDSLC9A9
STRING (EMBL)SLC9A9
ZODIACSLC9A9
Ontologies - Pathways
QuickGOQ8IVB4
Ontology : AmiGOprotein binding  ion transport  regulation of pH  sodium:proton antiporter activity  integral component of membrane  late endosome membrane  sodium ion transmembrane transport  sodium ion transmembrane transport  recycling endosome  hydrogen ion transmembrane transport  
Ontology : EGO-EBIprotein binding  ion transport  regulation of pH  sodium:proton antiporter activity  integral component of membrane  late endosome membrane  sodium ion transmembrane transport  sodium ion transmembrane transport  recycling endosome  hydrogen ion transmembrane transport  
NDEx NetworkSLC9A9
Atlas of Cancer Signalling NetworkSLC9A9
Wikipedia pathwaysSLC9A9
Orthology - Evolution
OrthoDB285195
GeneTree (enSembl)ENSG00000181804
Phylogenetic Trees/Animal Genes : TreeFamSLC9A9
HOVERGENQ8IVB4
HOGENOMQ8IVB4
Homologs : HomoloGeneSLC9A9
Homology/Alignments : Family Browser (UCSC)SLC9A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC9A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC9A9
dbVarSLC9A9
ClinVarSLC9A9
1000_GenomesSLC9A9 
Exome Variant ServerSLC9A9
ExAC (Exome Aggregation Consortium)SLC9A9 (select the gene name)
Genetic variants : HAPMAP285195
Genomic Variants (DGV)SLC9A9 [DGVbeta]
DECIPHER (Syndromes)3:142984064-143567373  ENSG00000181804
CONAN: Copy Number AnalysisSLC9A9 
Mutations
ICGC Data PortalSLC9A9 
TCGA Data PortalSLC9A9 
Broad Tumor PortalSLC9A9
OASIS PortalSLC9A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC9A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC9A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC9A9
DgiDB (Drug Gene Interaction Database)SLC9A9
DoCM (Curated mutations)SLC9A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC9A9 (select a term)
intoGenSLC9A9
Cancer3DSLC9A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608396    613410   
Orphanet
MedgenSLC9A9
Genetic Testing Registry SLC9A9
NextProtQ8IVB4 [Medical]
TSGene285195
GENETestsSLC9A9
Huge Navigator SLC9A9 [HugePedia]
snp3D : Map Gene to Disease285195
BioCentury BCIQSLC9A9
ClinGenSLC9A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285195
Chemical/Pharm GKB GenePA134889062
Clinical trialSLC9A9
Miscellaneous
canSAR (ICR)SLC9A9 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC9A9
EVEXSLC9A9
GoPubMedSLC9A9
iHOPSLC9A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:28:06 CET 2017

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