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SLC9B1 (solute carrier family 9 member B1)

Identity

Alias_namesNHEDC1
Na+/H+ exchanger domain containing 1
solute carrier family 9, subfamily B (cation proton antiporter 2), member 1
solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
Alias_symbol (synonym)NHA1
Other alias
HGNC (Hugo) SLC9B1
LocusID (NCBI) 150159
Atlas_Id 73501
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 102885048 and ends at 103019739 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC400643 () / SLC9B1 (4q24)SLC9B1 (4q24) / LRRK1 (15q26.3)SLC9B1 (4q24) / PTPRQ (12q21.31)
UBE2D3 (4q24) / SLC9B1 (4q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC9B1   24244
Cards
Entrez_Gene (NCBI)SLC9B1  150159  solute carrier family 9 member B1
AliasesNHA1; NHEDC1
GeneCards (Weizmann)SLC9B1
Ensembl hg19 (Hinxton)ENSG00000164037 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164037 [Gene_View]  chr4:102885048-103019739 [Contig_View]  SLC9B1 [Vega]
ICGC DataPortalENSG00000164037
TCGA cBioPortalSLC9B1
AceView (NCBI)SLC9B1
Genatlas (Paris)SLC9B1
WikiGenes150159
SOURCE (Princeton)SLC9B1
Genetics Home Reference (NIH)SLC9B1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC9B1  -     chr4:102885048-103019739 -  4q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC9B1  -     4q24   [Description]    (hg19-Feb_2009)
EnsemblSLC9B1 - 4q24 [CytoView hg19]  SLC9B1 - 4q24 [CytoView hg38]
Mapping of homologs : NCBISLC9B1 [Mapview hg19]  SLC9B1 [Mapview hg38]
OMIM611527   
Gene and transcription
Genbank (Entrez)AF447585 AK313592 AY461581 BC022079 BC046636
RefSeq transcript (Entrez)NM_001100874 NM_139173
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC9B1
Cluster EST : UnigeneHs.666728 [ NCBI ]
CGAP (NCI)Hs.666728
Alternative Splicing GalleryENSG00000164037
Gene ExpressionSLC9B1 [ NCBI-GEO ]   SLC9B1 [ EBI - ARRAY_EXPRESS ]   SLC9B1 [ SEEK ]   SLC9B1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC9B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150159
GTEX Portal (Tissue expression)SLC9B1
Human Protein AtlasENSG00000164037-SLC9B1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4ZJI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4ZJI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4ZJI4
Splice isoforms : SwissVarQ4ZJI4
PhosPhoSitePlusQ4ZJI4
Domains : Interpro (EBI)Cation/H_exchanger   
Domain families : Pfam (Sanger)Na_H_Exchanger (PF00999)   
Domain families : Pfam (NCBI)pfam00999   
Conserved Domain (NCBI)SLC9B1
DMDM Disease mutations150159
Blocks (Seattle)SLC9B1
SuperfamilyQ4ZJI4
Human Protein Atlas [tissue]ENSG00000164037-SLC9B1 [tissue]
Peptide AtlasQ4ZJI4
HPRD11240
IPIIPI00180926   IPI00879098   IPI00856023   IPI00878977   IPI00964789   IPI00963878   IPI00965829   IPI00967872   
Protein Interaction databases
DIP (DOE-UCLA)Q4ZJI4
IntAct (EBI)Q4ZJI4
FunCoupENSG00000164037
BioGRIDSLC9B1
STRING (EMBL)SLC9B1
ZODIACSLC9B1
Ontologies - Pathways
QuickGOQ4ZJI4
Ontology : AmiGOmitochondrion  plasma membrane  single fertilization  sodium:proton antiporter activity  integral component of membrane  flagellated sperm motility  ion transmembrane transport  sodium ion transmembrane transport  regulation of intracellular pH  sperm principal piece  hydrogen ion transmembrane transport  
Ontology : EGO-EBImitochondrion  plasma membrane  single fertilization  sodium:proton antiporter activity  integral component of membrane  flagellated sperm motility  ion transmembrane transport  sodium ion transmembrane transport  regulation of intracellular pH  sperm principal piece  hydrogen ion transmembrane transport  
NDEx NetworkSLC9B1
Atlas of Cancer Signalling NetworkSLC9B1
Wikipedia pathwaysSLC9B1
Orthology - Evolution
OrthoDB150159
GeneTree (enSembl)ENSG00000164037
Phylogenetic Trees/Animal Genes : TreeFamSLC9B1
HOVERGENQ4ZJI4
HOGENOMQ4ZJI4
Homologs : HomoloGeneSLC9B1
Homology/Alignments : Family Browser (UCSC)SLC9B1
Gene fusions - Rearrangements
Tumor Fusion PortalSLC9B1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC9B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC9B1
dbVarSLC9B1
ClinVarSLC9B1
1000_GenomesSLC9B1 
Exome Variant ServerSLC9B1
ExAC (Exome Aggregation Consortium)ENSG00000164037
GNOMAD BrowserENSG00000164037
Genetic variants : HAPMAP150159
Genomic Variants (DGV)SLC9B1 [DGVbeta]
DECIPHERSLC9B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC9B1 
Mutations
ICGC Data PortalSLC9B1 
TCGA Data PortalSLC9B1 
Broad Tumor PortalSLC9B1
OASIS PortalSLC9B1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC9B1
BioMutasearch SLC9B1
DgiDB (Drug Gene Interaction Database)SLC9B1
DoCM (Curated mutations)SLC9B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC9B1 (select a term)
intoGenSLC9B1
Cancer3DSLC9B1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611527   
Orphanet
DisGeNETSLC9B1
MedgenSLC9B1
Genetic Testing Registry SLC9B1
NextProtQ4ZJI4 [Medical]
TSGene150159
GENETestsSLC9B1
Target ValidationSLC9B1
Huge Navigator SLC9B1 [HugePedia]
snp3D : Map Gene to Disease150159
BioCentury BCIQSLC9B1
ClinGenSLC9B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150159
Chemical/Pharm GKB GenePA162397486
Clinical trialSLC9B1
Miscellaneous
canSAR (ICR)SLC9B1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC9B1
EVEXSLC9B1
GoPubMedSLC9B1
iHOPSLC9B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:10:54 CET 2017

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