Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC9C1 (solute carrier family 9 member C1)

Identity

Alias_namesSLC9A10
solute carrier family 9, isoform 10
solute carrier family 9, member 10
solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1
Alias_symbol (synonym)NHE
Other aliasNHE-10
sperm-NHE
HGNC (Hugo) SLC9C1
LocusID (NCBI) 285335
Atlas_Id 73502
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112140905 and ends at 112294258 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC9C1   31401
Cards
Entrez_Gene (NCBI)SLC9C1  285335  solute carrier family 9 member C1
AliasesNHE; NHE-10; SLC9A10; sperm-NHE
GeneCards (Weizmann)SLC9C1
Ensembl hg19 (Hinxton)ENSG00000172139 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172139 [Gene_View]  chr3:112140905-112294258 [Contig_View]  SLC9C1 [Vega]
ICGC DataPortalENSG00000172139
TCGA cBioPortalSLC9C1
AceView (NCBI)SLC9C1
Genatlas (Paris)SLC9C1
WikiGenes285335
SOURCE (Princeton)SLC9C1
Genetics Home Reference (NIH)SLC9C1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC9C1  -     chr3:112140905-112294258 -  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC9C1  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblSLC9C1 - 3q13.2 [CytoView hg19]  SLC9C1 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBISLC9C1 [Mapview hg19]  SLC9C1 [Mapview hg38]
OMIM612738   
Gene and transcription
Genbank (Entrez)AK128084 BC044801 BC143774 BK001328 DB068586
RefSeq transcript (Entrez)NM_001320531 NM_183061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC9C1
Cluster EST : UnigeneHs.680112 [ NCBI ]
CGAP (NCI)Hs.680112
Alternative Splicing GalleryENSG00000172139
Gene ExpressionSLC9C1 [ NCBI-GEO ]   SLC9C1 [ EBI - ARRAY_EXPRESS ]   SLC9C1 [ SEEK ]   SLC9C1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC9C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285335
GTEX Portal (Tissue expression)SLC9C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0N8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0N8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0N8
Splice isoforms : SwissVarQ4G0N8
PhosPhoSitePlusQ4G0N8
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)Cation/H_exchanger    Cation/H_exchanger_CPA1    cNMP-bd-like    cNMP-bd_dom    Ion_trans_dom    N/H_exchanger_10    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)cNMP_binding (PF00027)    Ion_trans (PF00520)    Na_H_Exchanger (PF00999)   
Domain families : Pfam (NCBI)pfam00027    pfam00520    pfam00999   
Conserved Domain (NCBI)SLC9C1
DMDM Disease mutations285335
Blocks (Seattle)SLC9C1
SuperfamilyQ4G0N8
Human Protein AtlasENSG00000172139
Peptide AtlasQ4G0N8
HPRD11257
IPIIPI00418791   IPI00645688   IPI00946005   IPI00983460   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0N8
IntAct (EBI)Q4G0N8
FunCoupENSG00000172139
BioGRIDSLC9C1
STRING (EMBL)SLC9C1
ZODIACSLC9C1
Ontologies - Pathways
QuickGOQ4G0N8
Ontology : AmiGOion channel activity  plasma membrane  multicellular organism development  spermatogenesis  sodium:proton antiporter activity  potassium:proton antiporter activity  integral component of membrane  cell differentiation  flagellated sperm motility  motile cilium  regulation of intracellular pH  potassium ion transmembrane transport  sodium ion import across plasma membrane  hydrogen ion transmembrane transport  
Ontology : EGO-EBIion channel activity  plasma membrane  multicellular organism development  spermatogenesis  sodium:proton antiporter activity  potassium:proton antiporter activity  integral component of membrane  cell differentiation  flagellated sperm motility  motile cilium  regulation of intracellular pH  potassium ion transmembrane transport  sodium ion import across plasma membrane  hydrogen ion transmembrane transport  
NDEx NetworkSLC9C1
Atlas of Cancer Signalling NetworkSLC9C1
Wikipedia pathwaysSLC9C1
Orthology - Evolution
OrthoDB285335
GeneTree (enSembl)ENSG00000172139
Phylogenetic Trees/Animal Genes : TreeFamSLC9C1
HOVERGENQ4G0N8
HOGENOMQ4G0N8
Homologs : HomoloGeneSLC9C1
Homology/Alignments : Family Browser (UCSC)SLC9C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC9C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC9C1
dbVarSLC9C1
ClinVarSLC9C1
1000_GenomesSLC9C1 
Exome Variant ServerSLC9C1
ExAC (Exome Aggregation Consortium)SLC9C1 (select the gene name)
Genetic variants : HAPMAP285335
Genomic Variants (DGV)SLC9C1 [DGVbeta]
DECIPHERSLC9C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC9C1 
Mutations
ICGC Data PortalSLC9C1 
TCGA Data PortalSLC9C1 
Broad Tumor PortalSLC9C1
OASIS PortalSLC9C1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC9C1
BioMutasearch SLC9C1
DgiDB (Drug Gene Interaction Database)SLC9C1
DoCM (Curated mutations)SLC9C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC9C1 (select a term)
intoGenSLC9C1
Cancer3DSLC9C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612738   
Orphanet
MedgenSLC9C1
Genetic Testing Registry SLC9C1
NextProtQ4G0N8 [Medical]
TSGene285335
GENETestsSLC9C1
Target ValidationSLC9C1
Huge Navigator SLC9C1 [HugePedia]
snp3D : Map Gene to Disease285335
BioCentury BCIQSLC9C1
ClinGenSLC9C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285335
Chemical/Pharm GKB GenePA134914619
Clinical trialSLC9C1
Miscellaneous
canSAR (ICR)SLC9C1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC9C1
EVEXSLC9C1
GoPubMedSLC9C1
iHOPSLC9C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:31 CEST 2017

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