Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC9C2 (solute carrier family 9 member C2 (putative))

Identity

Alias_namesSLC9A11
solute carrier family 9, isoform 11
solute carrier family 9, member 11
solute carrier family 9, member C2
Alias_symbol (synonym)MGC43026
Other alias
HGNC (Hugo) SLC9C2
LocusID (NCBI) 284525
Atlas_Id 73503
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 173500465 and ends at 173603094 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GATAD2B (1q21.3) / SLC9C2 (1q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC9C2   28664
Cards
Entrez_Gene (NCBI)SLC9C2  284525  solute carrier family 9 member C2 (putative)
AliasesSLC9A11
GeneCards (Weizmann)SLC9C2
Ensembl hg19 (Hinxton)ENSG00000162753 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162753 [Gene_View]  chr1:173500465-173603094 [Contig_View]  SLC9C2 [Vega]
ICGC DataPortalENSG00000162753
TCGA cBioPortalSLC9C2
AceView (NCBI)SLC9C2
Genatlas (Paris)SLC9C2
WikiGenes284525
SOURCE (Princeton)SLC9C2
Genetics Home Reference (NIH)SLC9C2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC9C2  -     chr1:173500465-173603094 -  1q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC9C2  -     1q25.1   [Description]    (hg19-Feb_2009)
EnsemblSLC9C2 - 1q25.1 [CytoView hg19]  SLC9C2 - 1q25.1 [CytoView hg38]
Mapping of homologs : NCBISLC9C2 [Mapview hg19]  SLC9C2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128104 AK302731 BC042592 BX648119 DB071569
RefSeq transcript (Entrez)NM_178527
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC9C2
Cluster EST : UnigeneHs.494981 [ NCBI ]
CGAP (NCI)Hs.494981
Alternative Splicing GalleryENSG00000162753
Gene ExpressionSLC9C2 [ NCBI-GEO ]   SLC9C2 [ EBI - ARRAY_EXPRESS ]   SLC9C2 [ SEEK ]   SLC9C2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC9C2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284525
GTEX Portal (Tissue expression)SLC9C2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TAH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TAH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TAH2
Splice isoforms : SwissVarQ5TAH2
PhosPhoSitePlusQ5TAH2
Domaine pattern : Prosite (Expaxy)CNMP_BINDING_3 (PS50042)   
Domains : Interpro (EBI)Cation/H_exchanger    Cation/H_exchanger_CPA1    Channel_four-helix_dom    cNMP-bd-like    cNMP-bd_dom    RmlC-like_jellyroll   
Domain families : Pfam (Sanger)cNMP_binding (PF00027)    Na_H_Exchanger (PF00999)   
Domain families : Pfam (NCBI)pfam00027    pfam00999   
Conserved Domain (NCBI)SLC9C2
DMDM Disease mutations284525
Blocks (Seattle)SLC9C2
SuperfamilyQ5TAH2
Human Protein AtlasENSG00000162753
Peptide AtlasQ5TAH2
HPRD15398
IPIIPI00328722   IPI01015305   
Protein Interaction databases
DIP (DOE-UCLA)Q5TAH2
IntAct (EBI)Q5TAH2
FunCoupENSG00000162753
BioGRIDSLC9C2
STRING (EMBL)SLC9C2
ZODIACSLC9C2
Ontologies - Pathways
QuickGOQ5TAH2
Ontology : AmiGOplasma membrane  sodium:proton antiporter activity  potassium:proton antiporter activity  integral component of membrane  regulation of intracellular pH  potassium ion transmembrane transport  sodium ion import across plasma membrane  hydrogen ion transmembrane transport  
Ontology : EGO-EBIplasma membrane  sodium:proton antiporter activity  potassium:proton antiporter activity  integral component of membrane  regulation of intracellular pH  potassium ion transmembrane transport  sodium ion import across plasma membrane  hydrogen ion transmembrane transport  
NDEx NetworkSLC9C2
Atlas of Cancer Signalling NetworkSLC9C2
Wikipedia pathwaysSLC9C2
Orthology - Evolution
OrthoDB284525
GeneTree (enSembl)ENSG00000162753
Phylogenetic Trees/Animal Genes : TreeFamSLC9C2
HOVERGENQ5TAH2
HOGENOMQ5TAH2
Homologs : HomoloGeneSLC9C2
Homology/Alignments : Family Browser (UCSC)SLC9C2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC9C2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC9C2
dbVarSLC9C2
ClinVarSLC9C2
1000_GenomesSLC9C2 
Exome Variant ServerSLC9C2
ExAC (Exome Aggregation Consortium)SLC9C2 (select the gene name)
Genetic variants : HAPMAP284525
Genomic Variants (DGV)SLC9C2 [DGVbeta]
DECIPHERSLC9C2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC9C2 
Mutations
ICGC Data PortalSLC9C2 
TCGA Data PortalSLC9C2 
Broad Tumor PortalSLC9C2
OASIS PortalSLC9C2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC9C2
BioMutasearch SLC9C2
DgiDB (Drug Gene Interaction Database)SLC9C2
DoCM (Curated mutations)SLC9C2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC9C2 (select a term)
intoGenSLC9C2
Cancer3DSLC9C2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC9C2
Genetic Testing Registry SLC9C2
NextProtQ5TAH2 [Medical]
TSGene284525
GENETestsSLC9C2
Target ValidationSLC9C2
Huge Navigator SLC9C2 [HugePedia]
snp3D : Map Gene to Disease284525
BioCentury BCIQSLC9C2
ClinGenSLC9C2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284525
Chemical/Pharm GKB GenePA134865165
Clinical trialSLC9C2
Miscellaneous
canSAR (ICR)SLC9C2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC9C2
EVEXSLC9C2
GoPubMedSLC9C2
iHOPSLC9C2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:31 CEST 2017

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