Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLCO1A2 (solute carrier organic anion transporter family member 1A2)

Identity

Alias (NCBI)OATP
OATP-A
OATP1A2
SLC21A3
HGNC (Hugo) SLCO1A2
HGNC Alias symbOATP
OATP1A2
OATP-A
HGNC Previous nameSLC21A3
HGNC Previous namesolute carrier family 21 (organic anion transporter), member 3
 solute carrier organic anion transporter family, member 1A2
LocusID (NCBI) 6579
Atlas_Id 50582
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 21264600 and ends at 21395437 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LIN7C (11p14.1) / SLCO1A2 (12p12.1)PSTK (10q26.13) / SLCO1A2 (12p12.1)SH3BP5 (3p25.1) / SLCO1A2 (12p12.1)
SLCO1A2 (12p12.1) / HP1BP3 (1p36.12)SLCO1A2 (12p12.1) / PPY (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SLCO1A2   10956
Cards
Entrez_Gene (NCBI)SLCO1A2    solute carrier organic anion transporter family member 1A2
AliasesOATP; OATP-A; OATP1A2; SLC21A3
GeneCards (Weizmann)SLCO1A2
Ensembl hg19 (Hinxton)ENSG00000084453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000084453 [Gene_View]  ENSG00000084453 [Sequence]  chr12:21264600-21395437 [Contig_View]  SLCO1A2 [Vega]
ICGC DataPortalENSG00000084453
TCGA cBioPortalSLCO1A2
AceView (NCBI)SLCO1A2
Genatlas (Paris)SLCO1A2
SOURCE (Princeton)SLCO1A2
Genetics Home Reference (NIH)SLCO1A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO1A2  -     chr12:21264600-21395437 -  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO1A2  -     12p12.1   [Description]    (hg19-Feb_2009)
GoldenPathSLCO1A2 - 12p12.1 [CytoView hg19]  SLCO1A2 - 12p12.1 [CytoView hg38]
ImmunoBaseENSG00000084453
genome Data Viewer NCBISLCO1A2 [Mapview hg19]  
OMIM602883   
Gene and transcription
Genbank (Entrez)AF085224 AF279784 AK296044 AK316249 BC042452
RefSeq transcript (Entrez)NM_001386878 NM_001386879 NM_001386880 NM_001386881 NM_001386882 NM_001386886 NM_001386887 NM_001386890 NM_001386908 NM_001386919 NM_001386920 NM_001386921 NM_001386922 NM_001386926 NM_001386927 NM_001386929 NM_001386931 NM_001386937 NM_001386938 NM_001386939 NM_001386940 NM_001386946 NM_001386947 NM_001386948 NM_001386949 NM_001386951 NM_001386952 NM_001386953 NM_001386954 NM_001386958 NM_001386959 NM_001386960 NM_001386961 NM_001386962 NM_001386963 NM_005075 NM_021094 NM_134431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLCO1A2
Alternative Splicing GalleryENSG00000084453
Gene ExpressionSLCO1A2 [ NCBI-GEO ]   SLCO1A2 [ EBI - ARRAY_EXPRESS ]   SLCO1A2 [ SEEK ]   SLCO1A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO1A2 [ Firebrowse - Broad ]
GenevisibleExpression of SLCO1A2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6579
GTEX Portal (Tissue expression)SLCO1A2
Human Protein AtlasENSG00000084453-SLCO1A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46721   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46721  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46721
Splice isoforms : SwissVarP46721
PhosPhoSitePlusP46721
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    Kazal_dom_sf    MFS_dom    MFS_trans_sf    OATP   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO1A2
Blocks (Seattle)SLCO1A2
SuperfamilyP46721
Human Protein Atlas [tissue]ENSG00000084453-SLCO1A2 [tissue]
Peptide AtlasP46721
HPRD09112
IPIIPI00008254   IPI00220618   IPI00925159   IPI00925616   IPI00925835   IPI00788717   IPI00925875   IPI00926126   IPI00926317   IPI00926553   IPI00926789   IPI01009933   IPI01009491   
Protein Interaction databases
DIP (DOE-UCLA)P46721
IntAct (EBI)P46721
BioGRIDSLCO1A2
STRING (EMBL)SLCO1A2
ZODIACSLCO1A2
Ontologies - Pathways
QuickGOP46721
Ontology : AmiGOplasma membrane  plasma membrane  integral component of plasma membrane  organic anion transmembrane transporter activity  bile acid transmembrane transporter activity  bile acid transmembrane transporter activity  sodium-independent organic anion transmembrane transporter activity  organic anion transport  bile acid and bile salt transport  bile acid and bile salt transport  sodium-independent organic anion transport  sodium-independent organic anion transport  transmembrane transport  
Ontology : EGO-EBIplasma membrane  plasma membrane  integral component of plasma membrane  organic anion transmembrane transporter activity  bile acid transmembrane transporter activity  bile acid transmembrane transporter activity  sodium-independent organic anion transmembrane transporter activity  organic anion transport  bile acid and bile salt transport  bile acid and bile salt transport  sodium-independent organic anion transport  sodium-independent organic anion transport  transmembrane transport  
Pathways : KEGGBile secretion   
NDEx NetworkSLCO1A2
Atlas of Cancer Signalling NetworkSLCO1A2
Wikipedia pathwaysSLCO1A2
Orthology - Evolution
OrthoDB6579
GeneTree (enSembl)ENSG00000084453
Phylogenetic Trees/Animal Genes : TreeFamSLCO1A2
HOGENOMP46721
Homologs : HomoloGeneSLCO1A2
Homology/Alignments : Family Browser (UCSC)SLCO1A2
Gene fusions - Rearrangements
Fusion : QuiverSLCO1A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO1A2 [hg38]
dbVarSLCO1A2
ClinVarSLCO1A2
MonarchSLCO1A2
1000_GenomesSLCO1A2 
Exome Variant ServerSLCO1A2
GNOMAD BrowserENSG00000084453
Varsome BrowserSLCO1A2
Genomic Variants (DGV)SLCO1A2 [DGVbeta]
DECIPHERSLCO1A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO1A2 
Mutations
ICGC Data PortalSLCO1A2 
TCGA Data PortalSLCO1A2 
Broad Tumor PortalSLCO1A2
OASIS PortalSLCO1A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO1A2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLCO1A2
Mutations and Diseases : HGMDSLCO1A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLCO1A2
DgiDB (Drug Gene Interaction Database)SLCO1A2
DoCM (Curated mutations)SLCO1A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLCO1A2 (select a term)
intoGenSLCO1A2
Cancer3DSLCO1A2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602883   
Orphanet
DisGeNETSLCO1A2
MedgenSLCO1A2
Genetic Testing Registry SLCO1A2
NextProtP46721 [Medical]
GENETestsSLCO1A2
Target ValidationSLCO1A2
Huge Navigator SLCO1A2 [HugePedia]
ClinGenSLCO1A2
Clinical trials, drugs, therapy
MyCancerGenomeSLCO1A2
Protein Interactions : CTD
Pharm GKB GenePA328
Pharm GKB PathwaysPA145011108   PA165816270   PA165816349   
PharosP46721
Clinical trialSLCO1A2
Miscellaneous
canSAR (ICR)SLCO1A2 (select the gene name)
HarmonizomeSLCO1A2
DataMed IndexSLCO1A2
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLCO1A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:46:31 CET 2021

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