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SLCO1B1 (solute carrier organic anion transporter family, member 1B1)

Identity

Other namesHBLRR
LST-1
LST1
OATP-C
OATP1B1
OATP2
OATPC
SLC21A6
HGNC (Hugo) SLCO1B1
LocusID (NCBI) 10599
Location 12p12.2
Location_base_pair Starts at 21284128 and ends at 21392730 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SLCO1B1   10959
Cards
Entrez_Gene (NCBI)SLCO1B1  10599  solute carrier organic anion transporter family, member 1B1
GeneCards (Weizmann)SLCO1B1
Ensembl (Hinxton)ENSG00000134538 [Gene_View]  chr12:21284128-21392730 [Contig_View]  SLCO1B1 [Vega]
AceView (NCBI)SLCO1B1
Genatlas (Paris)SLCO1B1
WikiGenes10599
SOURCE (Princeton)NM_006446
Genomic and cartography
GoldenPath (UCSC)SLCO1B1  -  12p12.2   chr12:21284128-21392730 +  12p12.2   [Description]    (hg19-Feb_2009)
EnsemblSLCO1B1 - 12p12.2 [CytoView]
Mapping of homologs : NCBISLCO1B1 [Mapview]
OMIM237450   604843   
Gene and transcription
Genbank (Entrez)AB026257 AF060500 AF205071 AJ132573 AK312970
RefSeq transcript (Entrez)NM_006446
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_011745 NT_009714 NW_001838052 NW_004929383
Consensus coding sequences : CCDS (NCBI)SLCO1B1
Cluster EST : UnigeneHs.449738 [ NCBI ]
CGAP (NCI)Hs.449738
Alternative Splicing : Fast-db (Paris)GSHG0006528
Alternative Splicing GalleryENSG00000134538
Gene ExpressionSLCO1B1 [ NCBI-GEO ]     SLCO1B1 [ SEEK ]   SLCO1B1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6L6 (Uniprot)
NextProtQ9Y6L6  [Medical]
With graphics : InterProQ9Y6L6
Splice isoforms : SwissVarQ9Y6L6 (Swissvar)
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    MFS_dom    MFS_dom_general_subst_transpt    OA_transporter   
Related proteins : CluSTrQ9Y6L6
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Domain families : Smart (EMBL)KAZAL (SM00280)  
DMDM Disease mutations10599
Blocks (Seattle)Q9Y6L6
Human Protein AtlasENSG00000134538
Peptide AtlasQ9Y6L6
HPRD09214
IPIIPI00295376   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6L6
IntAct (EBI)Q9Y6L6
FunCoupENSG00000134538
BioGRIDSLCO1B1
InParanoidQ9Y6L6
Interologous Interaction database Q9Y6L6
IntegromeDBSLCO1B1
STRING (EMBL)SLCO1B1
Ontologies - Pathways
Ontology : AmiGOplasma membrane  integral to plasma membrane  bile acid metabolic process  sodium-independent organic anion transmembrane transporter activity  organic anion transport  bile acid and bile salt transport  membrane  basolateral plasma membrane  sodium-independent organic anion transport  small molecule metabolic process  transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral to plasma membrane  bile acid metabolic process  sodium-independent organic anion transmembrane transporter activity  organic anion transport  bile acid and bile salt transport  membrane  basolateral plasma membrane  sodium-independent organic anion transport  small molecule metabolic process  transmembrane transport  
Pathways : KEGGBile secretion   
REACTOMESLCO1B1
Protein Interaction DatabaseSLCO1B1
Wikipedia pathwaysSLCO1B1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLCO1B1
SNP (GeneSNP Utah)SLCO1B1
SNP : HGBaseSLCO1B1
Genetic variants : HAPMAPSLCO1B1
1000_GenomesSLCO1B1 
ICGC programENSG00000134538 
Somatic Mutations in Cancer : COSMICSLCO1B1 
CONAN: Copy Number AnalysisSLCO1B1 
Mutations and Diseases : HGMDSLCO1B1
OMIM237450    604843   
GENETestsSLCO1B1
Disease Genetic AssociationSLCO1B1
Huge Navigator SLCO1B1 [HugePedia]  SLCO1B1 [HugeCancerGEM]
Genomic VariantsSLCO1B1  SLCO1B1 [DGVbeta]
Exome VariantSLCO1B1
dbVarSLCO1B1
ClinVarSLCO1B1
snp3D : Map Gene to Disease10599
General knowledge
Homologs : HomoloGeneSLCO1B1
Homology/Alignments : Family Browser (UCSC)SLCO1B1
Phylogenetic Trees/Animal Genes : TreeFamSLCO1B1
Chemical/Protein Interactions : CTD10599
Chemical/Pharm GKB GenePA134865839
Clinical trialSLCO1B1
Cancer Resource (Charite)ENSG00000134538
Other databases
Probes
Litterature
PubMed199 Pubmed reference(s) in Entrez
CoreMineSLCO1B1
iHOPSLCO1B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:15:41 CEST 2014

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