Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLCO1B7 (solute carrier organic anion transporter family member 1B7 (putative))

Identity

Alias (NCBI)LST-3
LST-3TM12
LST3
SLC21A21
HGNC (Hugo) SLCO1B7
HGNC Alias symbLST3
SLC21A21
HGNC Previous namesolute carrier organic anion transporter family, member 1B7 (non-functional)
 solute carrier organic anion transporter family member 1B7 (non-functional)
LocusID (NCBI) 338821
Atlas_Id 73504
Location 12p12.2  [Link to chromosome band 12p12]
Location_base_pair Starts at 21015696 and ends at 21090106 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLCO1B3 (12p12.2) / SLCO1B7 (12p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLCO1B7   32934
Cards
Entrez_Gene (NCBI)SLCO1B7    solute carrier organic anion transporter family member 1B7 (putative)
AliasesLST-3; LST-3TM12; LST3; SLC21A21
GeneCards (Weizmann)SLCO1B7
Ensembl hg19 (Hinxton)ENSG00000205754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205754 [Gene_View]  ENSG00000205754 [Sequence]  chr12:21015696-21090106 [Contig_View]  SLCO1B7 [Vega]
ICGC DataPortalENSG00000205754
TCGA cBioPortalSLCO1B7
AceView (NCBI)SLCO1B7
Genatlas (Paris)SLCO1B7
SOURCE (Princeton)SLCO1B7
Genetics Home Reference (NIH)SLCO1B7
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO1B7  -     chr12:21015696-21090106 +  12p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO1B7  -     12p12.2   [Description]    (hg19-Feb_2009)
GoldenPathSLCO1B7 - 12p12.2 [CytoView hg19]  SLCO1B7 - 12p12.2 [CytoView hg38]
ImmunoBaseENSG00000205754
genome Data Viewer NCBISLCO1B7 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF401642
RefSeq transcript (Entrez)NM_001009562
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLCO1B7
Alternative Splicing GalleryENSG00000205754
Gene ExpressionSLCO1B7 [ NCBI-GEO ]   SLCO1B7 [ EBI - ARRAY_EXPRESS ]   SLCO1B7 [ SEEK ]   SLCO1B7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO1B7 [ Firebrowse - Broad ]
GenevisibleExpression of SLCO1B7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338821
GTEX Portal (Tissue expression)SLCO1B7
Human Protein AtlasENSG00000205754-SLCO1B7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtG3V0H7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtG3V0H7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProG3V0H7
Splice isoforms : SwissVarG3V0H7
PhosPhoSitePlusG3V0H7
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    Kazal_dom_sf    MFS_dom    MFS_trans_sf    OATP   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO1B7
Blocks (Seattle)SLCO1B7
SuperfamilyG3V0H7
Human Protein Atlas [tissue]ENSG00000205754-SLCO1B7 [tissue]
Peptide AtlasG3V0H7
HPRD17455
IPIIPI00940856   IPI00243451   IPI01009582   
Protein Interaction databases
DIP (DOE-UCLA)G3V0H7
IntAct (EBI)G3V0H7
BioGRIDSLCO1B7
STRING (EMBL)SLCO1B7
ZODIACSLCO1B7
Ontologies - Pathways
QuickGOG3V0H7
Ontology : AmiGOintegral component of plasma membrane  bile acid transmembrane transporter activity  sodium-independent organic anion transmembrane transporter activity  bile acid and bile salt transport  sodium-independent organic anion transport  transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  bile acid transmembrane transporter activity  sodium-independent organic anion transmembrane transporter activity  bile acid and bile salt transport  sodium-independent organic anion transport  transmembrane transport  
NDEx NetworkSLCO1B7
Atlas of Cancer Signalling NetworkSLCO1B7
Wikipedia pathwaysSLCO1B7
Orthology - Evolution
OrthoDB338821
GeneTree (enSembl)ENSG00000205754
Phylogenetic Trees/Animal Genes : TreeFamSLCO1B7
HOGENOMG3V0H7
Homologs : HomoloGeneSLCO1B7
Homology/Alignments : Family Browser (UCSC)SLCO1B7
Gene fusions - Rearrangements
Fusion : QuiverSLCO1B7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO1B7 [hg38]
dbVarSLCO1B7
ClinVarSLCO1B7
MonarchSLCO1B7
1000_GenomesSLCO1B7 
Exome Variant ServerSLCO1B7
GNOMAD BrowserENSG00000205754
Varsome BrowserSLCO1B7
Genomic Variants (DGV)SLCO1B7 [DGVbeta]
DECIPHERSLCO1B7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO1B7 
Mutations
ICGC Data PortalSLCO1B7 
TCGA Data PortalSLCO1B7 
Broad Tumor PortalSLCO1B7
OASIS PortalSLCO1B7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO1B7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLCO1B7
Mutations and Diseases : HGMDSLCO1B7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLCO1B7
DgiDB (Drug Gene Interaction Database)SLCO1B7
DoCM (Curated mutations)SLCO1B7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLCO1B7 (select a term)
intoGenSLCO1B7
Cancer3DSLCO1B7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSLCO1B7
MedgenSLCO1B7
Genetic Testing Registry SLCO1B7
NextProtG3V0H7 [Medical]
GENETestsSLCO1B7
Target ValidationSLCO1B7
Huge Navigator SLCO1B7 [HugePedia]
ClinGenSLCO1B7
Clinical trials, drugs, therapy
MyCancerGenomeSLCO1B7
Protein Interactions : CTD
Pharm GKB GenePA166049008
Clinical trialSLCO1B7
Miscellaneous
canSAR (ICR)SLCO1B7 (select the gene name)
HarmonizomeSLCO1B7
DataMed IndexSLCO1B7
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLCO1B7
EVEXSLCO1B7
GoPubMedSLCO1B7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:27:29 CET 2020
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