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SLCO1B7 (solute carrier organic anion transporter family member 1B7 (putative))

Identity

Alias_namessolute carrier organic anion transporter family, member 1B7 (non-functional)
solute carrier organic anion transporter family member 1B7 (non-functional)
Alias_symbol (synonym)LST3
SLC21A21
Other aliasLST-3
LST-3TM12
HGNC (Hugo) SLCO1B7
LocusID (NCBI) 338821
Atlas_Id 73504
Location 12p12.2  [Link to chromosome band 12p12]
Location_base_pair Starts at 21015696 and ends at 21090106 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLCO1B3 (12p12.2) / SLCO1B7 (12p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLCO1B7   32934
Cards
Entrez_Gene (NCBI)SLCO1B7  338821  solute carrier organic anion transporter family member 1B7 (putative)
AliasesLST-3; LST-3TM12; LST3; SLC21A21
GeneCards (Weizmann)SLCO1B7
Ensembl hg19 (Hinxton)ENSG00000205754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205754 [Gene_View]  chr12:21015696-21090106 [Contig_View]  SLCO1B7 [Vega]
ICGC DataPortalENSG00000205754
TCGA cBioPortalSLCO1B7
AceView (NCBI)SLCO1B7
Genatlas (Paris)SLCO1B7
WikiGenes338821
SOURCE (Princeton)SLCO1B7
Genetics Home Reference (NIH)SLCO1B7
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO1B7  -     chr12:21015696-21090106 +  12p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO1B7  -     12p12.2   [Description]    (hg19-Feb_2009)
EnsemblSLCO1B7 - 12p12.2 [CytoView hg19]  SLCO1B7 - 12p12.2 [CytoView hg38]
Mapping of homologs : NCBISLCO1B7 [Mapview hg19]  SLCO1B7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF401642
RefSeq transcript (Entrez)NM_001009562
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLCO1B7
Cluster EST : UnigeneHs.729117 [ NCBI ]
CGAP (NCI)Hs.729117
Alternative Splicing GalleryENSG00000205754
Gene ExpressionSLCO1B7 [ NCBI-GEO ]   SLCO1B7 [ EBI - ARRAY_EXPRESS ]   SLCO1B7 [ SEEK ]   SLCO1B7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO1B7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338821
GTEX Portal (Tissue expression)SLCO1B7
Protein : pattern, domain, 3D structure
UniProt/SwissProtG3V0H7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtG3V0H7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProG3V0H7
Splice isoforms : SwissVarG3V0H7
PhosPhoSitePlusG3V0H7
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    MFS_dom    OA_transporter   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO1B7
DMDM Disease mutations338821
Blocks (Seattle)SLCO1B7
SuperfamilyG3V0H7
Human Protein AtlasENSG00000205754
Peptide AtlasG3V0H7
HPRD17455
IPIIPI00940856   IPI00243451   IPI01009582   
Protein Interaction databases
DIP (DOE-UCLA)G3V0H7
IntAct (EBI)G3V0H7
FunCoupENSG00000205754
BioGRIDSLCO1B7
STRING (EMBL)SLCO1B7
ZODIACSLCO1B7
Ontologies - Pathways
QuickGOG3V0H7
Ontology : AmiGOtransporter activity  plasma membrane  transport  integral component of membrane  
Ontology : EGO-EBItransporter activity  plasma membrane  transport  integral component of membrane  
Pathways : KEGGBile secretion   
NDEx NetworkSLCO1B7
Atlas of Cancer Signalling NetworkSLCO1B7
Wikipedia pathwaysSLCO1B7
Orthology - Evolution
OrthoDB338821
GeneTree (enSembl)ENSG00000205754
Phylogenetic Trees/Animal Genes : TreeFamSLCO1B7
HOVERGENG3V0H7
HOGENOMG3V0H7
Homologs : HomoloGeneSLCO1B7
Homology/Alignments : Family Browser (UCSC)SLCO1B7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO1B7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLCO1B7
dbVarSLCO1B7
ClinVarSLCO1B7
1000_GenomesSLCO1B7 
Exome Variant ServerSLCO1B7
ExAC (Exome Aggregation Consortium)SLCO1B7 (select the gene name)
Genetic variants : HAPMAP338821
Genomic Variants (DGV)SLCO1B7 [DGVbeta]
DECIPHERSLCO1B7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO1B7 
Mutations
ICGC Data PortalSLCO1B7 
TCGA Data PortalSLCO1B7 
Broad Tumor PortalSLCO1B7
OASIS PortalSLCO1B7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO1B7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLCO1B7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLCO1B7
DgiDB (Drug Gene Interaction Database)SLCO1B7
DoCM (Curated mutations)SLCO1B7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLCO1B7 (select a term)
intoGenSLCO1B7
Cancer3DSLCO1B7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLCO1B7
Genetic Testing Registry SLCO1B7
NextProtG3V0H7 [Medical]
TSGene338821
GENETestsSLCO1B7
Target ValidationSLCO1B7
Huge Navigator SLCO1B7 [HugePedia]
snp3D : Map Gene to Disease338821
BioCentury BCIQSLCO1B7
ClinGenSLCO1B7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338821
Chemical/Pharm GKB GenePA166049008
Clinical trialSLCO1B7
Miscellaneous
canSAR (ICR)SLCO1B7 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLCO1B7
EVEXSLCO1B7
GoPubMedSLCO1B7
iHOPSLCO1B7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:31 CEST 2017

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