Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLCO1C1 (solute carrier organic anion transporter family member 1C1)

Identity

Alias_namesSLC21A14
solute carrier family 21 (organic anion transporter), member 14
solute carrier organic anion transporter family, member 1C1
Alias_symbol (synonym)OATP-F
OATP1C1
OATP1
Other aliasOATP14
OATPF
OATPRP5
HGNC (Hugo) SLCO1C1
LocusID (NCBI) 53919
Atlas_Id 73505
Location 12p12.2  [Link to chromosome band 12p12]
Location_base_pair Starts at 20695465 and ends at 20753386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDE3A (12p12.2) / SLCO1C1 (12p12.2)RAD51AP1 (12p13.32) / SLCO1C1 (12p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLCO1C1   13819
Cards
Entrez_Gene (NCBI)SLCO1C1  53919  solute carrier organic anion transporter family member 1C1
AliasesOATP-F; OATP1; OATP14; OATP1C1; 
OATPF; OATPRP5; SLC21A14
GeneCards (Weizmann)SLCO1C1
Ensembl hg19 (Hinxton)ENSG00000139155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139155 [Gene_View]  chr12:20695465-20753386 [Contig_View]  SLCO1C1 [Vega]
ICGC DataPortalENSG00000139155
TCGA cBioPortalSLCO1C1
AceView (NCBI)SLCO1C1
Genatlas (Paris)SLCO1C1
WikiGenes53919
SOURCE (Princeton)SLCO1C1
Genetics Home Reference (NIH)SLCO1C1
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO1C1  -     chr12:20695465-20753386 +  12p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO1C1  -     12p12.2   [Description]    (hg19-Feb_2009)
EnsemblSLCO1C1 - 12p12.2 [CytoView hg19]  SLCO1C1 - 12p12.2 [CytoView hg38]
Mapping of homologs : NCBISLCO1C1 [Mapview hg19]  SLCO1C1 [Mapview hg38]
OMIM613389   
Gene and transcription
Genbank (Entrez)AF205076 AF260704 AK294333 AK296236 AK303713
RefSeq transcript (Entrez)NM_001145944 NM_001145945 NM_001145946 NM_017435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLCO1C1
Cluster EST : UnigeneHs.47261 [ NCBI ]
CGAP (NCI)Hs.47261
Alternative Splicing GalleryENSG00000139155
Gene ExpressionSLCO1C1 [ NCBI-GEO ]   SLCO1C1 [ EBI - ARRAY_EXPRESS ]   SLCO1C1 [ SEEK ]   SLCO1C1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO1C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53919
GTEX Portal (Tissue expression)SLCO1C1
Human Protein AtlasENSG00000139155-SLCO1C1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYB5
Splice isoforms : SwissVarQ9NYB5
PhosPhoSitePlusQ9NYB5
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    MFS_dom    OA_transporter    OATP1C1   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO1C1
DMDM Disease mutations53919
Blocks (Seattle)SLCO1C1
SuperfamilyQ9NYB5
Human Protein Atlas [tissue]ENSG00000139155-SLCO1C1 [tissue]
Peptide AtlasQ9NYB5
HPRD08342
IPIIPI00010134   IPI00552201   IPI01015556   IPI00922839   IPI00927272   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYB5
IntAct (EBI)Q9NYB5
FunCoupENSG00000139155
BioGRIDSLCO1C1
STRING (EMBL)SLCO1C1
ZODIACSLCO1C1
Ontologies - Pathways
QuickGOQ9NYB5
Ontology : AmiGOplasma membrane  organic anion transmembrane transporter activity  thyroid hormone transmembrane transporter activity  integral component of membrane  sodium-independent organic anion transport  thyroid hormone transport  
Ontology : EGO-EBIplasma membrane  organic anion transmembrane transporter activity  thyroid hormone transmembrane transporter activity  integral component of membrane  sodium-independent organic anion transport  thyroid hormone transport  
Pathways : KEGGThyroid hormone signaling pathway   
NDEx NetworkSLCO1C1
Atlas of Cancer Signalling NetworkSLCO1C1
Wikipedia pathwaysSLCO1C1
Orthology - Evolution
OrthoDB53919
GeneTree (enSembl)ENSG00000139155
Phylogenetic Trees/Animal Genes : TreeFamSLCO1C1
HOVERGENQ9NYB5
HOGENOMQ9NYB5
Homologs : HomoloGeneSLCO1C1
Homology/Alignments : Family Browser (UCSC)SLCO1C1
Gene fusions - Rearrangements
Fusion: Tumor Portal SLCO1C1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO1C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLCO1C1
dbVarSLCO1C1
ClinVarSLCO1C1
1000_GenomesSLCO1C1 
Exome Variant ServerSLCO1C1
ExAC (Exome Aggregation Consortium)ENSG00000139155
GNOMAD BrowserENSG00000139155
Genetic variants : HAPMAP53919
Genomic Variants (DGV)SLCO1C1 [DGVbeta]
DECIPHERSLCO1C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO1C1 
Mutations
ICGC Data PortalSLCO1C1 
TCGA Data PortalSLCO1C1 
Broad Tumor PortalSLCO1C1
OASIS PortalSLCO1C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO1C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLCO1C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLCO1C1
DgiDB (Drug Gene Interaction Database)SLCO1C1
DoCM (Curated mutations)SLCO1C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLCO1C1 (select a term)
intoGenSLCO1C1
Cancer3DSLCO1C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613389   
Orphanet
MedgenSLCO1C1
Genetic Testing Registry SLCO1C1
NextProtQ9NYB5 [Medical]
TSGene53919
GENETestsSLCO1C1
Target ValidationSLCO1C1
Huge Navigator SLCO1C1 [HugePedia]
snp3D : Map Gene to Disease53919
BioCentury BCIQSLCO1C1
ClinGenSLCO1C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53919
Chemical/Pharm GKB GenePA37815
Clinical trialSLCO1C1
Miscellaneous
canSAR (ICR)SLCO1C1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLCO1C1
EVEXSLCO1C1
GoPubMedSLCO1C1
iHOPSLCO1C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 12:27:52 CET 2017

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