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SLCO3A1 (solute carrier organic anion transporter family member 3A1)

Identity

Alias_namesSLC21A11
solute carrier family 21 (organic anion transporter), member 11
solute carrier organic anion transporter family, member 3A1
Alias_symbol (synonym)OATP-D
OATP3A1
Other aliasOATP-RP3
OATPD
OATPRP3
HGNC (Hugo) SLCO3A1
LocusID (NCBI) 28232
Atlas_Id 52292
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 91853708 and ends at 92172435 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IMP4 (2q21.1) / SLCO3A1 (15q26.1)SLCO3A1 (15q26.1) / BMPR2 (2q33.1)SLCO3A1 (15q26.1) / ELMO1 (7p14.2)
SLCO3A1 (15q26.1) / HDDC3 (15q26.1)TRIOBP (22q13.1) / SLCO3A1 (15q26.1)SLCO3A1 15q26.1 / BMPR2 2q33.1
SLCO3A1 15q26.1 / HDDC3 15q26.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLCO3A1   10952
Cards
Entrez_Gene (NCBI)SLCO3A1  28232  solute carrier organic anion transporter family member 3A1
AliasesOATP-D; OATP-RP3; OATP3A1; OATPD; 
OATPRP3; SLC21A11
GeneCards (Weizmann)SLCO3A1
Ensembl hg19 (Hinxton)ENSG00000176463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176463 [Gene_View]  chr15:91853708-92172435 [Contig_View]  SLCO3A1 [Vega]
ICGC DataPortalENSG00000176463
TCGA cBioPortalSLCO3A1
AceView (NCBI)SLCO3A1
Genatlas (Paris)SLCO3A1
WikiGenes28232
SOURCE (Princeton)SLCO3A1
Genetics Home Reference (NIH)SLCO3A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO3A1  -     chr15:91853708-92172435 +  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO3A1  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblSLCO3A1 - 15q26.1 [CytoView hg19]  SLCO3A1 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBISLCO3A1 [Mapview hg19]  SLCO3A1 [Mapview hg38]
OMIM612435   
Gene and transcription
Genbank (Entrez)AB031050 AF187816 AF205074 AK057031 AK097797
RefSeq transcript (Entrez)NM_001145044 NM_013272
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLCO3A1
Cluster EST : UnigeneHs.707541 [ NCBI ]
CGAP (NCI)Hs.707541
Alternative Splicing GalleryENSG00000176463
Gene ExpressionSLCO3A1 [ NCBI-GEO ]   SLCO3A1 [ EBI - ARRAY_EXPRESS ]   SLCO3A1 [ SEEK ]   SLCO3A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO3A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28232
GTEX Portal (Tissue expression)SLCO3A1
Human Protein AtlasENSG00000176463-SLCO3A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIG8
Splice isoforms : SwissVarQ9UIG8
PhosPhoSitePlusQ9UIG8
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)   
Domains : Interpro (EBI)Kazal_dom    MFS_dom    OA_transporter   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO3A1
DMDM Disease mutations28232
Blocks (Seattle)SLCO3A1
SuperfamilyQ9UIG8
Human Protein Atlas [tissue]ENSG00000176463-SLCO3A1 [tissue]
Peptide AtlasQ9UIG8
HPRD07502
IPIIPI00296394   IPI00787518   IPI00925015   IPI00925207   IPI01025779   IPI01026226   IPI01026573   IPI01026032   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIG8
IntAct (EBI)Q9UIG8
FunCoupENSG00000176463
BioGRIDSLCO3A1
STRING (EMBL)SLCO3A1
ZODIACSLCO3A1
Ontologies - Pathways
QuickGOQ9UIG8
Ontology : AmiGOplasma membrane  sodium-independent organic anion transmembrane transporter activity  integral component of membrane  sodium-independent organic anion transport  
Ontology : EGO-EBIplasma membrane  sodium-independent organic anion transmembrane transporter activity  integral component of membrane  sodium-independent organic anion transport  
NDEx NetworkSLCO3A1
Atlas of Cancer Signalling NetworkSLCO3A1
Wikipedia pathwaysSLCO3A1
Orthology - Evolution
OrthoDB28232
GeneTree (enSembl)ENSG00000176463
Phylogenetic Trees/Animal Genes : TreeFamSLCO3A1
HOVERGENQ9UIG8
HOGENOMQ9UIG8
Homologs : HomoloGeneSLCO3A1
Homology/Alignments : Family Browser (UCSC)SLCO3A1
Gene fusions - Rearrangements
Fusion : MitelmanSLCO3A1/BMPR2 [15q26.1/2q33.1]  
Fusion : MitelmanSLCO3A1/ELMO1 [15q26.1/7p14.2]  [t(7;15)(p14;q26)]  
Fusion : MitelmanSLCO3A1/HDDC3 [15q26.1/15q26.1]  [t(15;15)(q26;q26)]  
Fusion: TCGA_MDACCSLCO3A1 15q26.1 BMPR2 2q33.1 LUSC
Fusion: TCGA_MDACCSLCO3A1 15q26.1 HDDC3 15q26.1 LGG
Tumor Fusion PortalSLCO3A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO3A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLCO3A1
dbVarSLCO3A1
ClinVarSLCO3A1
1000_GenomesSLCO3A1 
Exome Variant ServerSLCO3A1
ExAC (Exome Aggregation Consortium)ENSG00000176463
GNOMAD BrowserENSG00000176463
Genetic variants : HAPMAP28232
Genomic Variants (DGV)SLCO3A1 [DGVbeta]
DECIPHERSLCO3A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO3A1 
Mutations
ICGC Data PortalSLCO3A1 
TCGA Data PortalSLCO3A1 
Broad Tumor PortalSLCO3A1
OASIS PortalSLCO3A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO3A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLCO3A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLCO3A1
DgiDB (Drug Gene Interaction Database)SLCO3A1
DoCM (Curated mutations)SLCO3A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLCO3A1 (select a term)
intoGenSLCO3A1
Cancer3DSLCO3A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612435   
Orphanet
DisGeNETSLCO3A1
MedgenSLCO3A1
Genetic Testing Registry SLCO3A1
NextProtQ9UIG8 [Medical]
TSGene28232
GENETestsSLCO3A1
Target ValidationSLCO3A1
Huge Navigator SLCO3A1 [HugePedia]
snp3D : Map Gene to Disease28232
BioCentury BCIQSLCO3A1
ClinGenSLCO3A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28232
Chemical/Pharm GKB GenePA35837
Clinical trialSLCO3A1
Miscellaneous
canSAR (ICR)SLCO3A1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLCO3A1
EVEXSLCO3A1
GoPubMedSLCO3A1
iHOPSLCO3A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:59:42 CET 2017

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