Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLCO4A1 (solute carrier organic anion transporter family member 4A1)

Identity

Alias (NCBI)OATP-E
OATP1
OATP4A1
OATPE
OATPRP1
POAT
SLC21A12
HGNC (Hugo) SLCO4A1
HGNC Alias symbOATP-E
OATP4A1
HGNC Previous nameSLC21A12
HGNC Previous namesolute carrier family 21 (organic anion transporter), member 12
 solute carrier organic anion transporter family, member 4A1
LocusID (NCBI) 28231
Atlas_Id 55131
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62642503 and ends at 62672293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
B4GALNT3 (12p13.33) / SLCO4A1 (20q13.33)CACNA2D2 (3p21.31) / SLCO4A1 (20q13.33)IFITM2 (11p15.5) / SLCO4A1 (20q13.33)
SLCO4A1 (20q13.33) / ADRM1 (20q13.33)SLCO4A1 (20q13.33) / GCDH (19p13.2)SLCO4A1 (20q13.33) / SLCO4A1 (20q13.33)
SLCO4A1 (20q13.33) / ZNF691 (1p34.2)B4GALNT3 12p13.33 / SLCO4A1 20q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)SLCO4A1   10953
Cards
Entrez_Gene (NCBI)SLCO4A1    solute carrier organic anion transporter family member 4A1
AliasesOATP-E; OATP1; OATP4A1; OATPE; 
OATPRP1; POAT; SLC21A12
GeneCards (Weizmann)SLCO4A1
Ensembl hg19 (Hinxton)ENSG00000101187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101187 [Gene_View]  ENSG00000101187 [Sequence]  chr20:62642503-62672293 [Contig_View]  SLCO4A1 [Vega]
ICGC DataPortalENSG00000101187
TCGA cBioPortalSLCO4A1
AceView (NCBI)SLCO4A1
Genatlas (Paris)SLCO4A1
SOURCE (Princeton)SLCO4A1
Genetics Home Reference (NIH)SLCO4A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO4A1  -     chr20:62642503-62672293 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO4A1  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathSLCO4A1 - 20q13.33 [CytoView hg19]  SLCO4A1 - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000101187
Genome Data Viewer NCBISLCO4A1 [Mapview hg19]  
OMIM612436   
Gene and transcription
Genbank (Entrez)AB031051 AF104334 AF187817 AF205072 AI660559
RefSeq transcript (Entrez)NM_016354
Consensus coding sequences : CCDS (NCBI)SLCO4A1
Gene ExpressionSLCO4A1 [ NCBI-GEO ]   SLCO4A1 [ EBI - ARRAY_EXPRESS ]   SLCO4A1 [ SEEK ]   SLCO4A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO4A1 [ Firebrowse - Broad ]
GenevisibleExpression of SLCO4A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28231
GTEX Portal (Tissue expression)SLCO4A1
Human Protein AtlasENSG00000101187-SLCO4A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BD0
PhosPhoSitePlusQ96BD0
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    Kazal_dom_sf    MFS_dom    MFS_trans_sf    OATP   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO4A1
SuperfamilyQ96BD0
AlphaFold pdb e-kbQ96BD0   
Human Protein Atlas [tissue]ENSG00000101187-SLCO4A1 [tissue]
HPRD11582
Protein Interaction databases
DIP (DOE-UCLA)Q96BD0
IntAct (EBI)Q96BD0
BioGRIDSLCO4A1
STRING (EMBL)SLCO4A1
ZODIACSLCO4A1
Ontologies - Pathways
QuickGOQ96BD0
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  sodium-independent organic anion transmembrane transporter activity  thyroid hormone transmembrane transporter activity  sodium-independent organic anion transport  sodium-independent organic anion transport  transmembrane transport  thyroid hormone transport  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  sodium-independent organic anion transmembrane transporter activity  thyroid hormone transmembrane transporter activity  sodium-independent organic anion transport  sodium-independent organic anion transport  transmembrane transport  thyroid hormone transport  
NDEx NetworkSLCO4A1
Atlas of Cancer Signalling NetworkSLCO4A1
Wikipedia pathwaysSLCO4A1
Orthology - Evolution
OrthoDB28231
GeneTree (enSembl)ENSG00000101187
Phylogenetic Trees/Animal Genes : TreeFamSLCO4A1
Homologs : HomoloGeneSLCO4A1
Homology/Alignments : Family Browser (UCSC)SLCO4A1
Gene fusions - Rearrangements
Fusion : MitelmanB4GALNT3/SLCO4A1 [12p13.33/20q13.33]  
Fusion : QuiverSLCO4A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO4A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLCO4A1
dbVarSLCO4A1
ClinVarSLCO4A1
MonarchSLCO4A1
1000_GenomesSLCO4A1 
Exome Variant ServerSLCO4A1
GNOMAD BrowserENSG00000101187
Varsome BrowserSLCO4A1
ACMGSLCO4A1 variants
VarityQ96BD0
Genomic Variants (DGV)SLCO4A1 [DGVbeta]
DECIPHERSLCO4A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO4A1 
Mutations
ICGC Data PortalSLCO4A1 
TCGA Data PortalSLCO4A1 
Broad Tumor PortalSLCO4A1
OASIS PortalSLCO4A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO4A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLCO4A1
Mutations and Diseases : HGMDSLCO4A1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLCO4A1
DgiDB (Drug Gene Interaction Database)SLCO4A1
DoCM (Curated mutations)SLCO4A1
CIViC (Clinical Interpretations of Variants in Cancer)SLCO4A1
Cancer3DSLCO4A1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612436   
Orphanet
DisGeNETSLCO4A1
MedgenSLCO4A1
Genetic Testing Registry SLCO4A1
NextProtQ96BD0 [Medical]
GENETestsSLCO4A1
Target ValidationSLCO4A1
Huge Navigator SLCO4A1 [HugePedia]
ClinGenSLCO4A1
Clinical trials, drugs, therapy
MyCancerGenomeSLCO4A1
Protein Interactions : CTDSLCO4A1
Pharm GKB GenePA35838
PharosQ96BD0
Clinical trialSLCO4A1
Miscellaneous
canSAR (ICR)SLCO4A1
HarmonizomeSLCO4A1
DataMed IndexSLCO4A1
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLCO4A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:03 CEST 2021
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