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SLCO4C1 (solute carrier organic anion transporter family member 4C1)

Identity

Alias (NCBI)OATP-H
OATP-M1
OATP4C1
OATPX
PRO2176
SLC21A20
HGNC (Hugo) SLCO4C1
HGNC Alias symbSLC21A20
OATP4C1
OATPX
OATP-H
HGNC Previous namesolute carrier organic anion transporter family, member 4C1
LocusID (NCBI) 353189
Atlas_Id 73508
Location 5q21.1  [Link to chromosome band 5q21]
Location_base_pair Starts at 102233986 and ends at 102296284 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLCO4C1   23612
Cards
Entrez_Gene (NCBI)SLCO4C1    solute carrier organic anion transporter family member 4C1
AliasesOATP-H; OATP-M1; OATP4C1; OATPX; 
PRO2176; SLC21A20
GeneCards (Weizmann)SLCO4C1
Ensembl hg19 (Hinxton)ENSG00000173930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173930 [Gene_View]  ENSG00000173930 [Sequence]  chr5:102233986-102296284 [Contig_View]  SLCO4C1 [Vega]
ICGC DataPortalENSG00000173930
TCGA cBioPortalSLCO4C1
AceView (NCBI)SLCO4C1
Genatlas (Paris)SLCO4C1
SOURCE (Princeton)SLCO4C1
Genetics Home Reference (NIH)SLCO4C1
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO4C1  -     chr5:102233986-102296284 -  5q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO4C1  -     5q21.1   [Description]    (hg19-Feb_2009)
GoldenPathSLCO4C1 - 5q21.1 [CytoView hg19]  SLCO4C1 - 5q21.1 [CytoView hg38]
ImmunoBaseENSG00000173930
Genome Data Viewer NCBISLCO4C1 [Mapview hg19]  
OMIM609013   
Gene and transcription
Genbank (Entrez)AF119865 AF401643 AK128854 AY273896 BX647349
RefSeq transcript (Entrez)NM_180991
Consensus coding sequences : CCDS (NCBI)SLCO4C1
Gene ExpressionSLCO4C1 [ NCBI-GEO ]   SLCO4C1 [ EBI - ARRAY_EXPRESS ]   SLCO4C1 [ SEEK ]   SLCO4C1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO4C1 [ Firebrowse - Broad ]
GenevisibleExpression of SLCO4C1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353189
GTEX Portal (Tissue expression)SLCO4C1
Human Protein AtlasENSG00000173930-SLCO4C1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQN7
PhosPhoSitePlusQ6ZQN7
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    Kazal_dom_sf    MFS_dom    MFS_trans_sf    OATP   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO4C1
SuperfamilyQ6ZQN7
AlphaFold pdb e-kbQ6ZQN7   
Human Protein Atlas [tissue]ENSG00000173930-SLCO4C1 [tissue]
HPRD12354
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQN7
IntAct (EBI)Q6ZQN7
BioGRIDSLCO4C1
STRING (EMBL)SLCO4C1
ZODIACSLCO4C1
Ontologies - Pathways
QuickGOQ6ZQN7
Ontology : AmiGOplasma membrane  integral component of plasma membrane  multicellular organism development  spermatogenesis  sodium-independent organic anion transmembrane transporter activity  basolateral plasma membrane  cell differentiation  azurophil granule membrane  specific granule membrane  sodium-independent organic anion transport  sodium-independent organic anion transport  neutrophil degranulation  transmembrane transport  extracellular exosome  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  multicellular organism development  spermatogenesis  sodium-independent organic anion transmembrane transporter activity  basolateral plasma membrane  cell differentiation  azurophil granule membrane  specific granule membrane  sodium-independent organic anion transport  sodium-independent organic anion transport  neutrophil degranulation  transmembrane transport  extracellular exosome  
NDEx NetworkSLCO4C1
Atlas of Cancer Signalling NetworkSLCO4C1
Wikipedia pathwaysSLCO4C1
Orthology - Evolution
OrthoDB353189
GeneTree (enSembl)ENSG00000173930
Phylogenetic Trees/Animal Genes : TreeFamSLCO4C1
Homologs : HomoloGeneSLCO4C1
Homology/Alignments : Family Browser (UCSC)SLCO4C1
Gene fusions - Rearrangements
Fusion : QuiverSLCO4C1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO4C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLCO4C1
dbVarSLCO4C1
ClinVarSLCO4C1
MonarchSLCO4C1
1000_GenomesSLCO4C1 
Exome Variant ServerSLCO4C1
GNOMAD BrowserENSG00000173930
Varsome BrowserSLCO4C1
ACMGSLCO4C1 variants
VarityQ6ZQN7
Genomic Variants (DGV)SLCO4C1 [DGVbeta]
DECIPHERSLCO4C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO4C1 
Mutations
ICGC Data PortalSLCO4C1 
TCGA Data PortalSLCO4C1 
Broad Tumor PortalSLCO4C1
OASIS PortalSLCO4C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO4C1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLCO4C1
Mutations and Diseases : HGMDSLCO4C1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLCO4C1
DgiDB (Drug Gene Interaction Database)SLCO4C1
DoCM (Curated mutations)SLCO4C1
CIViC (Clinical Interpretations of Variants in Cancer)SLCO4C1
Cancer3DSLCO4C1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609013   
Orphanet
DisGeNETSLCO4C1
MedgenSLCO4C1
Genetic Testing Registry SLCO4C1
NextProtQ6ZQN7 [Medical]
GENETestsSLCO4C1
Target ValidationSLCO4C1
Huge Navigator SLCO4C1 [HugePedia]
ClinGenSLCO4C1
Clinical trials, drugs, therapy
MyCancerGenomeSLCO4C1
Protein Interactions : CTDSLCO4C1
Pharm GKB GenePA134892408
PharosQ6ZQN7
Clinical trialSLCO4C1
Miscellaneous
canSAR (ICR)SLCO4C1
HarmonizomeSLCO4C1
DataMed IndexSLCO4C1
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLCO4C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:21:16 CEST 2021

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