Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLCO4C1 (solute carrier organic anion transporter family member 4C1)

Identity

Alias_namessolute carrier organic anion transporter family, member 4C1
Alias_symbol (synonym)SLC21A20
OATP4C1
OATPX
OATP-H
Other aliasOATP-M1
PRO2176
HGNC (Hugo) SLCO4C1
LocusID (NCBI) 353189
Atlas_Id 73508
Location 5q21.1  [Link to chromosome band 5q21]
Location_base_pair Starts at 102233986 and ends at 102296549 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLCO4C1   23612
Cards
Entrez_Gene (NCBI)SLCO4C1  353189  solute carrier organic anion transporter family member 4C1
AliasesOATP-H; OATP-M1; OATP4C1; OATPX; 
PRO2176; SLC21A20
GeneCards (Weizmann)SLCO4C1
Ensembl hg19 (Hinxton)ENSG00000173930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173930 [Gene_View]  chr5:102233986-102296549 [Contig_View]  SLCO4C1 [Vega]
ICGC DataPortalENSG00000173930
TCGA cBioPortalSLCO4C1
AceView (NCBI)SLCO4C1
Genatlas (Paris)SLCO4C1
WikiGenes353189
SOURCE (Princeton)SLCO4C1
Genetics Home Reference (NIH)SLCO4C1
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO4C1  -     chr5:102233986-102296549 -  5q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO4C1  -     5q21.1   [Description]    (hg19-Feb_2009)
EnsemblSLCO4C1 - 5q21.1 [CytoView hg19]  SLCO4C1 - 5q21.1 [CytoView hg38]
Mapping of homologs : NCBISLCO4C1 [Mapview hg19]  SLCO4C1 [Mapview hg38]
OMIM609013   
Gene and transcription
Genbank (Entrez)AF119865 AF401643 AK128854 AY273896 BC148351
RefSeq transcript (Entrez)NM_180991
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLCO4C1
Cluster EST : UnigeneHs.127648 [ NCBI ]
CGAP (NCI)Hs.127648
Alternative Splicing GalleryENSG00000173930
Gene ExpressionSLCO4C1 [ NCBI-GEO ]   SLCO4C1 [ EBI - ARRAY_EXPRESS ]   SLCO4C1 [ SEEK ]   SLCO4C1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO4C1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353189
GTEX Portal (Tissue expression)SLCO4C1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQN7
Splice isoforms : SwissVarQ6ZQN7
PhosPhoSitePlusQ6ZQN7
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    MFS_dom    OA_transporter   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO4C1
DMDM Disease mutations353189
Blocks (Seattle)SLCO4C1
SuperfamilyQ6ZQN7
Human Protein AtlasENSG00000173930
Peptide AtlasQ6ZQN7
HPRD12354
IPIIPI00470538   IPI00020581   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQN7
IntAct (EBI)Q6ZQN7
FunCoupENSG00000173930
BioGRIDSLCO4C1
STRING (EMBL)SLCO4C1
ZODIACSLCO4C1
Ontologies - Pathways
QuickGOQ6ZQN7
Ontology : AmiGOplasma membrane  multicellular organism development  spermatogenesis  sodium-independent organic anion transmembrane transporter activity  integral component of membrane  basolateral plasma membrane  cell differentiation  azurophil granule membrane  specific granule membrane  sodium-independent organic anion transport  neutrophil degranulation  extracellular exosome  
Ontology : EGO-EBIplasma membrane  multicellular organism development  spermatogenesis  sodium-independent organic anion transmembrane transporter activity  integral component of membrane  basolateral plasma membrane  cell differentiation  azurophil granule membrane  specific granule membrane  sodium-independent organic anion transport  neutrophil degranulation  extracellular exosome  
NDEx NetworkSLCO4C1
Atlas of Cancer Signalling NetworkSLCO4C1
Wikipedia pathwaysSLCO4C1
Orthology - Evolution
OrthoDB353189
GeneTree (enSembl)ENSG00000173930
Phylogenetic Trees/Animal Genes : TreeFamSLCO4C1
HOVERGENQ6ZQN7
HOGENOMQ6ZQN7
Homologs : HomoloGeneSLCO4C1
Homology/Alignments : Family Browser (UCSC)SLCO4C1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO4C1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLCO4C1
dbVarSLCO4C1
ClinVarSLCO4C1
1000_GenomesSLCO4C1 
Exome Variant ServerSLCO4C1
ExAC (Exome Aggregation Consortium)SLCO4C1 (select the gene name)
Genetic variants : HAPMAP353189
Genomic Variants (DGV)SLCO4C1 [DGVbeta]
DECIPHERSLCO4C1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO4C1 
Mutations
ICGC Data PortalSLCO4C1 
TCGA Data PortalSLCO4C1 
Broad Tumor PortalSLCO4C1
OASIS PortalSLCO4C1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO4C1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLCO4C1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLCO4C1
DgiDB (Drug Gene Interaction Database)SLCO4C1
DoCM (Curated mutations)SLCO4C1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLCO4C1 (select a term)
intoGenSLCO4C1
Cancer3DSLCO4C1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609013   
Orphanet
MedgenSLCO4C1
Genetic Testing Registry SLCO4C1
NextProtQ6ZQN7 [Medical]
TSGene353189
GENETestsSLCO4C1
Target ValidationSLCO4C1
Huge Navigator SLCO4C1 [HugePedia]
snp3D : Map Gene to Disease353189
BioCentury BCIQSLCO4C1
ClinGenSLCO4C1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353189
Chemical/Pharm GKB GenePA134892408
Clinical trialSLCO4C1
Miscellaneous
canSAR (ICR)SLCO4C1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLCO4C1
EVEXSLCO4C1
GoPubMedSLCO4C1
iHOPSLCO4C1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:32 CEST 2017

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