Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLCO5A1 (solute carrier organic anion transporter family member 5A1)

Identity

Alias_namesSLC21A15
solute carrier family 21 (organic anion transporter), member 15
solute carrier organic anion transporter family, member 5A1
Alias_symbol (synonym)OATPRP4
OATP-J
OATP5A1
Other aliasOATP-RP4
OATPJ
HGNC (Hugo) SLCO5A1
LocusID (NCBI) 81796
Atlas_Id 52297
Location 8q13.3  [Link to chromosome band 8q13]
Location_base_pair Starts at 69672333 and ends at 69833390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NKAIN3 (8q12.3) / SLCO5A1 (8q13.3)NKAIN3 8q12.3 / SLCO5A1 8q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLCO5A1   19046
Cards
Entrez_Gene (NCBI)SLCO5A1  81796  solute carrier organic anion transporter family member 5A1
AliasesOATP-J; OATP-RP4; OATP5A1; OATPJ; 
OATPRP4; SLC21A15
GeneCards (Weizmann)SLCO5A1
Ensembl hg19 (Hinxton)ENSG00000137571 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137571 [Gene_View]  chr8:69672333-69833390 [Contig_View]  SLCO5A1 [Vega]
ICGC DataPortalENSG00000137571
TCGA cBioPortalSLCO5A1
AceView (NCBI)SLCO5A1
Genatlas (Paris)SLCO5A1
WikiGenes81796
SOURCE (Princeton)SLCO5A1
Genetics Home Reference (NIH)SLCO5A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLCO5A1  -     chr8:69672333-69833390 -  8q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLCO5A1  -     8q13.3   [Description]    (hg19-Feb_2009)
EnsemblSLCO5A1 - 8q13.3 [CytoView hg19]  SLCO5A1 - 8q13.3 [CytoView hg38]
Mapping of homologs : NCBISLCO5A1 [Mapview hg19]  SLCO5A1 [Mapview hg38]
OMIM613543   
Gene and transcription
Genbank (Entrez)AA602921 AF205075 AK022760 AK022971 AK096879
RefSeq transcript (Entrez)NM_001146008 NM_001146009 NM_030958
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLCO5A1
Cluster EST : UnigeneHs.443609 [ NCBI ]
CGAP (NCI)Hs.443609
Alternative Splicing GalleryENSG00000137571
Gene ExpressionSLCO5A1 [ NCBI-GEO ]   SLCO5A1 [ EBI - ARRAY_EXPRESS ]   SLCO5A1 [ SEEK ]   SLCO5A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLCO5A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81796
GTEX Portal (Tissue expression)SLCO5A1
Human Protein AtlasENSG00000137571-SLCO5A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2Y9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2Y9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2Y9
Splice isoforms : SwissVarQ9H2Y9
PhosPhoSitePlusQ9H2Y9
Domaine pattern : Prosite (Expaxy)KAZAL_2 (PS51465)    MFS (PS50850)   
Domains : Interpro (EBI)Kazal_dom    MFS_dom    OA_transporter   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)    OATP (PF03137)   
Domain families : Pfam (NCBI)pfam07648    pfam03137   
Conserved Domain (NCBI)SLCO5A1
DMDM Disease mutations81796
Blocks (Seattle)SLCO5A1
SuperfamilyQ9H2Y9
Human Protein Atlas [tissue]ENSG00000137571-SLCO5A1 [tissue]
Peptide AtlasQ9H2Y9
HPRD15399
IPIIPI00008909   IPI00925505   IPI00977131   IPI00922909   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2Y9
IntAct (EBI)Q9H2Y9
FunCoupENSG00000137571
BioGRIDSLCO5A1
STRING (EMBL)SLCO5A1
ZODIACSLCO5A1
Ontologies - Pathways
QuickGOQ9H2Y9
Ontology : AmiGOtransporter activity  plasma membrane  transport  integral component of membrane  
Ontology : EGO-EBItransporter activity  plasma membrane  transport  integral component of membrane  
NDEx NetworkSLCO5A1
Atlas of Cancer Signalling NetworkSLCO5A1
Wikipedia pathwaysSLCO5A1
Orthology - Evolution
OrthoDB81796
GeneTree (enSembl)ENSG00000137571
Phylogenetic Trees/Animal Genes : TreeFamSLCO5A1
HOVERGENQ9H2Y9
HOGENOMQ9H2Y9
Homologs : HomoloGeneSLCO5A1
Homology/Alignments : Family Browser (UCSC)SLCO5A1
Gene fusions - Rearrangements
Fusion : MitelmanNKAIN3/SLCO5A1 [8q12.3/8q13.3]  [t(8;8)(q12;q13)]  
Fusion: TCGA_MDACCNKAIN3 8q12.3 SLCO5A1 8q13.3 BRCA
Tumor Fusion PortalSLCO5A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLCO5A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLCO5A1
dbVarSLCO5A1
ClinVarSLCO5A1
1000_GenomesSLCO5A1 
Exome Variant ServerSLCO5A1
ExAC (Exome Aggregation Consortium)ENSG00000137571
GNOMAD BrowserENSG00000137571
Genetic variants : HAPMAP81796
Genomic Variants (DGV)SLCO5A1 [DGVbeta]
DECIPHERSLCO5A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLCO5A1 
Mutations
ICGC Data PortalSLCO5A1 
TCGA Data PortalSLCO5A1 
Broad Tumor PortalSLCO5A1
OASIS PortalSLCO5A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLCO5A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLCO5A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLCO5A1
DgiDB (Drug Gene Interaction Database)SLCO5A1
DoCM (Curated mutations)SLCO5A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLCO5A1 (select a term)
intoGenSLCO5A1
Cancer3DSLCO5A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613543   
Orphanet
DisGeNETSLCO5A1
MedgenSLCO5A1
Genetic Testing Registry SLCO5A1
NextProtQ9H2Y9 [Medical]
TSGene81796
GENETestsSLCO5A1
Target ValidationSLCO5A1
Huge Navigator SLCO5A1 [HugePedia]
snp3D : Map Gene to Disease81796
BioCentury BCIQSLCO5A1
ClinGenSLCO5A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81796
Chemical/Pharm GKB GenePA134948571
Clinical trialSLCO5A1
Miscellaneous
canSAR (ICR)SLCO5A1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLCO5A1
EVEXSLCO5A1
GoPubMedSLCO5A1
iHOPSLCO5A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:35:28 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.